Strain Fitness in Pseudomonas putida KT2440 around PP_5170

Experiment: Growth at 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5168 and PP_5169 are separated by 3 nucleotidesPP_5169 and PP_5170 are separated by 11 nucleotidesPP_5170 and PP_5171 are separated by 184 nucleotides PP_5168: PP_5168 - sulfate/thiosulfate import ATP-binding protein, at 5,893,480 to 5,894,469 _5168 PP_5169: PP_5169 - sulfate ABC transporter, inner membrane subunit CysW, at 5,894,473 to 5,895,345 _5169 PP_5170: PP_5170 - sulfate ABC transporter, inner membrane subunit CysT, at 5,895,357 to 5,896,175 _5170 PP_5171: PP_5171 - sulfate ABC transporter, at 5,896,360 to 5,897,388 _5171 Position (kb) 5895 5896 5897Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5894.409 kb on + strandat 5894.410 kb on - strandat 5894.452 kb on - strandat 5894.505 kb on + strandat 5894.508 kb on + strandat 5894.509 kb on - strandat 5894.509 kb on - strandat 5894.597 kb on + strand, within PP_5169at 5894.597 kb on + strand, within PP_5169at 5894.598 kb on - strand, within PP_5169at 5894.598 kb on - strand, within PP_5169at 5894.598 kb on - strand, within PP_5169at 5894.598 kb on - strand, within PP_5169at 5894.607 kb on - strandat 5894.703 kb on + strand, within PP_5169at 5894.704 kb on - strand, within PP_5169at 5894.720 kb on + strand, within PP_5169at 5894.860 kb on + strand, within PP_5169at 5894.908 kb on + strand, within PP_5169at 5894.908 kb on + strand, within PP_5169at 5894.908 kb on + strand, within PP_5169at 5894.909 kb on - strand, within PP_5169at 5894.909 kb on - strand, within PP_5169at 5894.909 kb on - strand, within PP_5169at 5894.909 kb on - strand, within PP_5169at 5894.909 kb on - strand, within PP_5169at 5894.917 kb on - strand, within PP_5169at 5894.972 kb on + strand, within PP_5169at 5894.972 kb on + strand, within PP_5169at 5894.972 kb on + strand, within PP_5169at 5895.053 kb on + strand, within PP_5169at 5895.054 kb on - strand, within PP_5169at 5895.054 kb on - strand, within PP_5169at 5895.089 kb on - strand, within PP_5169at 5895.089 kb on - strand, within PP_5169at 5895.089 kb on - strand, within PP_5169at 5895.089 kb on - strand, within PP_5169at 5895.111 kb on + strand, within PP_5169at 5895.112 kb on - strandat 5895.209 kb on - strand, within PP_5169at 5895.273 kb on + strandat 5895.274 kb on - strandat 5895.455 kb on - strand, within PP_5170at 5895.455 kb on - strand, within PP_5170at 5895.455 kb on - strand, within PP_5170at 5895.460 kb on + strand, within PP_5170at 5895.460 kb on + strand, within PP_5170at 5895.461 kb on - strand, within PP_5170at 5895.917 kb on - strand, within PP_5170at 5895.917 kb on - strand, within PP_5170at 5895.945 kb on - strand, within PP_5170at 5896.111 kb on + strandat 5896.112 kb on - strandat 5896.112 kb on - strandat 5896.112 kb on - strandat 5896.112 kb on - strandat 5896.123 kb on + strandat 5896.124 kb on - strandat 5896.163 kb on + strandat 5896.163 kb on + strandat 5896.164 kb on - strandat 5896.164 kb on - strandat 5896.164 kb on - strandat 5896.175 kb on + strandat 5896.175 kb on + strandat 5896.175 kb on + strandat 5896.175 kb on + strandat 5896.175 kb on + strandat 5896.175 kb on + strandat 5896.176 kb on - strandat 5896.176 kb on - strandat 5896.176 kb on - strandat 5896.176 kb on - strandat 5896.179 kb on + strandat 5896.180 kb on - strandat 5896.198 kb on + strandat 5896.198 kb on + strandat 5896.199 kb on - strandat 5896.199 kb on - strandat 5896.361 kb on + strandat 5896.361 kb on + strandat 5896.361 kb on + strandat 5896.362 kb on - strandat 5896.362 kb on - strandat 5896.373 kb on + strandat 5896.373 kb on + strandat 5896.373 kb on + strandat 5896.374 kb on - strandat 5896.374 kb on - strandat 5896.518 kb on - strand, within PP_5171at 5896.556 kb on + strand, within PP_5171at 5896.557 kb on - strand, within PP_5171at 5896.557 kb on - strand, within PP_5171at 5896.571 kb on + strand, within PP_5171at 5896.801 kb on + strand, within PP_5171at 5896.801 kb on + strandat 5896.802 kb on - strand, within PP_5171at 5896.802 kb on - strand, within PP_5171at 5896.826 kb on + strand, within PP_5171at 5896.826 kb on + strand, within PP_5171at 5896.827 kb on - strand, within PP_5171at 5896.827 kb on - strand, within PP_5171at 5896.827 kb on - strand, within PP_5171at 5897.018 kb on + strand, within PP_5171at 5897.018 kb on + strand, within PP_5171at 5897.018 kb on + strand, within PP_5171at 5897.019 kb on - strand, within PP_5171at 5897.019 kb on - strand, within PP_5171

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 30C
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5,894,409 + +0.3
5,894,410 - +0.3
5,894,452 - +0.6
5,894,505 + -0.3
5,894,508 + -0.9
5,894,509 - -1.6
5,894,509 - -0.1
5,894,597 + PP_5169 0.14 +0.1
5,894,597 + PP_5169 0.14 -1.1
5,894,598 - PP_5169 0.14 -1.1
5,894,598 - PP_5169 0.14 -0.2
5,894,598 - PP_5169 0.14 -1.3
5,894,598 - PP_5169 0.14 +0.1
5,894,607 - +2.7
5,894,703 + PP_5169 0.26 -0.7
5,894,704 - PP_5169 0.26 -0.1
5,894,720 + PP_5169 0.28 +0.8
5,894,860 + PP_5169 0.44 -1.4
5,894,908 + PP_5169 0.50 -0.2
5,894,908 + PP_5169 0.50 -0.0
5,894,908 + PP_5169 0.50 +0.3
5,894,909 - PP_5169 0.50 +0.5
5,894,909 - PP_5169 0.50 -0.4
5,894,909 - PP_5169 0.50 +0.9
5,894,909 - PP_5169 0.50 +1.5
5,894,909 - PP_5169 0.50 -0.9
5,894,917 - PP_5169 0.51 +0.8
5,894,972 + PP_5169 0.57 -2.9
5,894,972 + PP_5169 0.57 -0.1
5,894,972 + PP_5169 0.57 -2.2
5,895,053 + PP_5169 0.66 -1.1
5,895,054 - PP_5169 0.67 -0.9
5,895,054 - PP_5169 0.67 -0.4
5,895,089 - PP_5169 0.71 -0.2
5,895,089 - PP_5169 0.71 -0.6
5,895,089 - PP_5169 0.71 -0.3
5,895,089 - PP_5169 0.71 +2.1
5,895,111 + PP_5169 0.73 +1.0
5,895,112 - +0.5
5,895,209 - PP_5169 0.84 -0.6
5,895,273 + +0.6
5,895,274 - +0.4
5,895,455 - PP_5170 0.12 -0.6
5,895,455 - PP_5170 0.12 +2.2
5,895,455 - PP_5170 0.12 +0.7
5,895,460 + PP_5170 0.13 -0.2
5,895,460 + PP_5170 0.13 +1.5
5,895,461 - PP_5170 0.13 +0.2
5,895,917 - PP_5170 0.68 +1.3
5,895,917 - PP_5170 0.68 -0.6
5,895,945 - PP_5170 0.72 -2.0
5,896,111 + -1.4
5,896,112 - +0.2
5,896,112 - -0.5
5,896,112 - -2.0
5,896,112 - +0.9
5,896,123 + -0.9
5,896,124 - +0.9
5,896,163 + -0.4
5,896,163 + +0.1
5,896,164 - -0.0
5,896,164 - +1.0
5,896,164 - -2.4
5,896,175 + -3.9
5,896,175 + -0.7
5,896,175 + -0.4
5,896,175 + -0.4
5,896,175 + +0.1
5,896,175 + +1.1
5,896,176 - +0.4
5,896,176 - +0.9
5,896,176 - +0.3
5,896,176 - -2.3
5,896,179 + -0.4
5,896,180 - -1.2
5,896,198 + -1.0
5,896,198 + -0.2
5,896,199 - +0.4
5,896,199 - +1.4
5,896,361 + +0.6
5,896,361 + -0.3
5,896,361 + +0.4
5,896,362 - +0.4
5,896,362 - +0.4
5,896,373 + -0.6
5,896,373 + -0.8
5,896,373 + +0.6
5,896,374 - +0.5
5,896,374 - +1.9
5,896,518 - PP_5171 0.15 +1.2
5,896,556 + PP_5171 0.19 +0.4
5,896,557 - PP_5171 0.19 +0.6
5,896,557 - PP_5171 0.19 -1.9
5,896,571 + PP_5171 0.21 -0.9
5,896,801 + PP_5171 0.43 +0.0
5,896,801 + -0.1
5,896,802 - PP_5171 0.43 -0.1
5,896,802 - PP_5171 0.43 -1.0
5,896,826 + PP_5171 0.45 +1.0
5,896,826 + PP_5171 0.45 +0.6
5,896,827 - PP_5171 0.45 +1.0
5,896,827 - PP_5171 0.45 +0.1
5,896,827 - PP_5171 0.45 +0.7
5,897,018 + PP_5171 0.64 +0.8
5,897,018 + PP_5171 0.64 -0.6
5,897,018 + PP_5171 0.64 -1.2
5,897,019 - PP_5171 0.64 -0.0
5,897,019 - PP_5171 0.64 -0.1

Or see this region's nucleotide sequence