Strain Fitness in Pseudomonas putida KT2440 around PP_3974

Experiment: Growth at 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3972 and PP_3974 are separated by 537 nucleotidesPP_3974 and PP_3975 are separated by 19 nucleotidesPP_3975 and PP_3976 are separated by 207 nucleotides PP_3972: PP_3972 - Oxidoreductase, short chain dehydrogenase/reductase family, at 4,480,132 to 4,481,457 _3972 PP_3974: PP_3974 - Transcriptional regulator, LysR family, at 4,481,995 to 4,482,981 _3974 PP_3975: PP_3975 - conserved protein of unknown function, at 4,483,001 to 4,483,462 _3975 PP_3976: PP_3976 - Hydrolase, isochorismatase family, at 4,483,670 to 4,484,356 _3976 Position (kb) 4481 4482 4483Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4481.041 kb on + strand, within PP_3972at 4481.041 kb on + strand, within PP_3972at 4481.041 kb on + strand, within PP_3972at 4481.042 kb on - strand, within PP_3972at 4481.042 kb on - strand, within PP_3972at 4481.042 kb on - strand, within PP_3972at 4481.042 kb on - strand, within PP_3972at 4481.086 kb on + strand, within PP_3972at 4481.086 kb on + strand, within PP_3972at 4481.087 kb on - strand, within PP_3972at 4481.087 kb on - strand, within PP_3972at 4481.087 kb on - strand, within PP_3972at 4481.087 kb on - strand, within PP_3972at 4481.087 kb on - strand, within PP_3972at 4481.122 kb on + strand, within PP_3972at 4481.122 kb on + strand, within PP_3972at 4481.123 kb on - strand, within PP_3972at 4481.123 kb on - strand, within PP_3972at 4481.123 kb on - strand, within PP_3972at 4481.123 kb on - strand, within PP_3972at 4481.123 kb on - strand, within PP_3972at 4481.123 kb on - strand, within PP_3972at 4481.123 kb on - strand, within PP_3972at 4481.153 kb on + strand, within PP_3972at 4481.153 kb on + strand, within PP_3972at 4481.153 kb on + strand, within PP_3972at 4481.154 kb on - strand, within PP_3972at 4481.154 kb on - strand, within PP_3972at 4481.224 kb on + strand, within PP_3972at 4481.224 kb on + strand, within PP_3972at 4481.224 kb on + strand, within PP_3972at 4481.224 kb on + strand, within PP_3972at 4481.224 kb on + strand, within PP_3972at 4481.225 kb on - strand, within PP_3972at 4481.225 kb on - strand, within PP_3972at 4481.225 kb on - strand, within PP_3972at 4481.225 kb on - strand, within PP_3972at 4481.225 kb on - strand, within PP_3972at 4481.228 kb on + strand, within PP_3972at 4481.228 kb on + strand, within PP_3972at 4481.228 kb on + strand, within PP_3972at 4481.228 kb on + strand, within PP_3972at 4481.228 kb on + strand, within PP_3972at 4481.229 kb on - strand, within PP_3972at 4481.229 kb on - strand, within PP_3972at 4481.229 kb on - strand, within PP_3972at 4481.232 kb on - strand, within PP_3972at 4481.232 kb on - strand, within PP_3972at 4481.232 kb on - strand, within PP_3972at 4481.240 kb on + strand, within PP_3972at 4481.241 kb on - strand, within PP_3972at 4481.241 kb on - strand, within PP_3972at 4481.241 kb on - strand, within PP_3972at 4481.241 kb on - strand, within PP_3972at 4481.276 kb on + strand, within PP_3972at 4481.277 kb on - strand, within PP_3972at 4481.367 kb on + strandat 4481.367 kb on + strandat 4481.367 kb on + strandat 4481.387 kb on + strandat 4481.387 kb on + strandat 4481.388 kb on - strandat 4481.388 kb on - strandat 4481.388 kb on - strandat 4481.388 kb on - strandat 4481.390 kb on + strandat 4481.455 kb on + strandat 4481.456 kb on - strandat 4481.470 kb on + strandat 4481.470 kb on + strandat 4481.470 kb on + strandat 4481.470 kb on + strandat 4481.471 kb on - strandat 4481.502 kb on + strandat 4481.502 kb on + strandat 4481.503 kb on - strandat 4481.503 kb on - strandat 4481.503 kb on - strandat 4481.503 kb on - strandat 4481.514 kb on + strandat 4481.515 kb on - strandat 4481.515 kb on - strandat 4481.518 kb on - strandat 4481.549 kb on + strandat 4481.550 kb on - strandat 4481.587 kb on - strandat 4481.587 kb on - strandat 4481.587 kb on - strandat 4481.971 kb on + strandat 4481.972 kb on - strandat 4481.972 kb on - strandat 4481.972 kb on - strandat 4481.972 kb on - strandat 4481.974 kb on + strandat 4481.975 kb on - strandat 4482.089 kb on + strandat 4482.147 kb on + strand, within PP_3974at 4482.183 kb on - strand, within PP_3974at 4482.183 kb on - strand, within PP_3974at 4482.251 kb on - strand, within PP_3974at 4482.251 kb on - strand, within PP_3974at 4482.397 kb on + strand, within PP_3974at 4482.397 kb on + strand, within PP_3974at 4482.398 kb on - strand, within PP_3974at 4482.398 kb on - strand, within PP_3974at 4482.447 kb on + strand, within PP_3974at 4482.504 kb on + strand, within PP_3974at 4482.581 kb on - strand, within PP_3974at 4482.643 kb on + strand, within PP_3974at 4482.680 kb on - strand, within PP_3974at 4482.708 kb on + strand, within PP_3974at 4482.708 kb on + strand, within PP_3974at 4482.750 kb on + strand, within PP_3974at 4482.750 kb on + strand, within PP_3974at 4482.751 kb on - strand, within PP_3974at 4482.896 kb on + strandat 4482.897 kb on - strandat 4482.979 kb on + strandat 4483.075 kb on + strand, within PP_3975at 4483.085 kb on - strand, within PP_3975at 4483.085 kb on - strand, within PP_3975at 4483.085 kb on - strand, within PP_3975at 4483.085 kb on - strand, within PP_3975at 4483.087 kb on + strand, within PP_3975at 4483.087 kb on + strand, within PP_3975at 4483.088 kb on - strand, within PP_3975at 4483.088 kb on - strand, within PP_3975at 4483.116 kb on + strand, within PP_3975at 4483.117 kb on - strand, within PP_3975at 4483.135 kb on + strand, within PP_3975at 4483.173 kb on + strand, within PP_3975at 4483.173 kb on + strand, within PP_3975at 4483.173 kb on + strand, within PP_3975at 4483.174 kb on - strand, within PP_3975at 4483.174 kb on - strand, within PP_3975at 4483.174 kb on - strand, within PP_3975at 4483.174 kb on - strand, within PP_3975at 4483.174 kb on - strand, within PP_3975at 4483.212 kb on + strand, within PP_3975at 4483.212 kb on + strand, within PP_3975at 4483.212 kb on + strand, within PP_3975at 4483.213 kb on - strand, within PP_3975at 4483.213 kb on - strand, within PP_3975at 4483.213 kb on - strand, within PP_3975at 4483.213 kb on - strand, within PP_3975at 4483.213 kb on - strand, within PP_3975at 4483.213 kb on - strand, within PP_3975at 4483.213 kb on - strand, within PP_3975at 4483.243 kb on - strand, within PP_3975at 4483.425 kb on + strandat 4483.426 kb on - strandat 4483.515 kb on + strandat 4483.515 kb on + strandat 4483.516 kb on - strandat 4483.516 kb on - strandat 4483.516 kb on - strandat 4483.600 kb on + strandat 4483.600 kb on + strandat 4483.601 kb on - strandat 4483.795 kb on - strand, within PP_3976at 4483.873 kb on + strand, within PP_3976at 4483.873 kb on + strand, within PP_3976at 4483.873 kb on + strand, within PP_3976at 4483.874 kb on - strand, within PP_3976at 4483.874 kb on - strand, within PP_3976at 4483.874 kb on - strand, within PP_3976at 4483.878 kb on - strand, within PP_3976

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 30C
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4,481,041 + PP_3972 0.69 +0.5
4,481,041 + PP_3972 0.69 -1.8
4,481,041 + PP_3972 0.69 +0.8
4,481,042 - PP_3972 0.69 +0.5
4,481,042 - PP_3972 0.69 +0.3
4,481,042 - PP_3972 0.69 +0.1
4,481,042 - PP_3972 0.69 -0.2
4,481,086 + PP_3972 0.72 -1.3
4,481,086 + PP_3972 0.72 +0.9
4,481,087 - PP_3972 0.72 -0.6
4,481,087 - PP_3972 0.72 +0.9
4,481,087 - PP_3972 0.72 +2.2
4,481,087 - PP_3972 0.72 +0.3
4,481,087 - PP_3972 0.72 +1.9
4,481,122 + PP_3972 0.75 +1.5
4,481,122 + PP_3972 0.75 -0.1
4,481,123 - PP_3972 0.75 -1.1
4,481,123 - PP_3972 0.75 +1.2
4,481,123 - PP_3972 0.75 +0.1
4,481,123 - PP_3972 0.75 -0.2
4,481,123 - PP_3972 0.75 -0.1
4,481,123 - PP_3972 0.75 +0.0
4,481,123 - PP_3972 0.75 +0.8
4,481,153 + PP_3972 0.77 -0.9
4,481,153 + PP_3972 0.77 +0.5
4,481,153 + PP_3972 0.77 +0.1
4,481,154 - PP_3972 0.77 -1.1
4,481,154 - PP_3972 0.77 +0.6
4,481,224 + PP_3972 0.82 -0.4
4,481,224 + PP_3972 0.82 -2.4
4,481,224 + PP_3972 0.82 -0.2
4,481,224 + PP_3972 0.82 +0.9
4,481,224 + PP_3972 0.82 +0.3
4,481,225 - PP_3972 0.82 +0.2
4,481,225 - PP_3972 0.82 -0.3
4,481,225 - PP_3972 0.82 +0.9
4,481,225 - PP_3972 0.82 -0.5
4,481,225 - PP_3972 0.82 +0.7
4,481,228 + PP_3972 0.83 +0.4
4,481,228 + PP_3972 0.83 +0.8
4,481,228 + PP_3972 0.83 +0.1
4,481,228 + PP_3972 0.83 -0.8
4,481,228 + PP_3972 0.83 -2.1
4,481,229 - PP_3972 0.83 -0.5
4,481,229 - PP_3972 0.83 -0.8
4,481,229 - PP_3972 0.83 +0.4
4,481,232 - PP_3972 0.83 -0.1
4,481,232 - PP_3972 0.83 +0.3
4,481,232 - PP_3972 0.83 +0.4
4,481,240 + PP_3972 0.84 -0.2
4,481,241 - PP_3972 0.84 -0.0
4,481,241 - PP_3972 0.84 -0.3
4,481,241 - PP_3972 0.84 -0.5
4,481,241 - PP_3972 0.84 -1.9
4,481,276 + PP_3972 0.86 +0.5
4,481,277 - PP_3972 0.86 +0.0
4,481,367 + -1.0
4,481,367 + +0.3
4,481,367 + +0.6
4,481,387 + -0.1
4,481,387 + -0.1
4,481,388 - -1.4
4,481,388 - -0.5
4,481,388 - -1.0
4,481,388 - +0.6
4,481,390 + +0.8
4,481,455 + -0.4
4,481,456 - +0.0
4,481,470 + -0.4
4,481,470 + +0.4
4,481,470 + +0.2
4,481,470 + -3.0
4,481,471 - -0.4
4,481,502 + +0.4
4,481,502 + +0.9
4,481,503 - +2.1
4,481,503 - -0.5
4,481,503 - -0.0
4,481,503 - +1.1
4,481,514 + +0.6
4,481,515 - +0.1
4,481,515 - +0.1
4,481,518 - -1.0
4,481,549 + +0.1
4,481,550 - +0.1
4,481,587 - +0.2
4,481,587 - +0.5
4,481,587 - +0.4
4,481,971 + -0.1
4,481,972 - -0.5
4,481,972 - -0.4
4,481,972 - -1.1
4,481,972 - -0.6
4,481,974 + -0.7
4,481,975 - +1.6
4,482,089 + +2.3
4,482,147 + PP_3974 0.15 +1.2
4,482,183 - PP_3974 0.19 -0.2
4,482,183 - PP_3974 0.19 -1.6
4,482,251 - PP_3974 0.26 +1.6
4,482,251 - PP_3974 0.26 +1.4
4,482,397 + PP_3974 0.41 -0.0
4,482,397 + PP_3974 0.41 +0.3
4,482,398 - PP_3974 0.41 +0.2
4,482,398 - PP_3974 0.41 +0.4
4,482,447 + PP_3974 0.46 -1.0
4,482,504 + PP_3974 0.52 +1.6
4,482,581 - PP_3974 0.59 +0.8
4,482,643 + PP_3974 0.66 +1.0
4,482,680 - PP_3974 0.69 +0.9
4,482,708 + PP_3974 0.72 +0.1
4,482,708 + PP_3974 0.72 +1.0
4,482,750 + PP_3974 0.76 +0.6
4,482,750 + PP_3974 0.76 +1.1
4,482,751 - PP_3974 0.77 +0.1
4,482,896 + +0.5
4,482,897 - +0.5
4,482,979 + +0.8
4,483,075 + PP_3975 0.16 +1.0
4,483,085 - PP_3975 0.18 +0.5
4,483,085 - PP_3975 0.18 +0.2
4,483,085 - PP_3975 0.18 +0.0
4,483,085 - PP_3975 0.18 -0.1
4,483,087 + PP_3975 0.19 +0.7
4,483,087 + PP_3975 0.19 -0.2
4,483,088 - PP_3975 0.19 +0.4
4,483,088 - PP_3975 0.19 +0.6
4,483,116 + PP_3975 0.25 -1.3
4,483,117 - PP_3975 0.25 +0.0
4,483,135 + PP_3975 0.29 +1.2
4,483,173 + PP_3975 0.37 +0.9
4,483,173 + PP_3975 0.37 +1.0
4,483,173 + PP_3975 0.37 +1.3
4,483,174 - PP_3975 0.37 +1.2
4,483,174 - PP_3975 0.37 -1.2
4,483,174 - PP_3975 0.37 -1.8
4,483,174 - PP_3975 0.37 -2.1
4,483,174 - PP_3975 0.37 -0.8
4,483,212 + PP_3975 0.46 +0.1
4,483,212 + PP_3975 0.46 -0.1
4,483,212 + PP_3975 0.46 +1.2
4,483,213 - PP_3975 0.46 -0.3
4,483,213 - PP_3975 0.46 -0.2
4,483,213 - PP_3975 0.46 -3.6
4,483,213 - PP_3975 0.46 -1.0
4,483,213 - PP_3975 0.46 +0.8
4,483,213 - PP_3975 0.46 +1.0
4,483,213 - PP_3975 0.46 +0.1
4,483,243 - PP_3975 0.52 +1.3
4,483,425 + -0.0
4,483,426 - -0.0
4,483,515 + -0.8
4,483,515 + +0.5
4,483,516 - +0.4
4,483,516 - -1.1
4,483,516 - -0.1
4,483,600 + +0.6
4,483,600 + +0.6
4,483,601 - +1.2
4,483,795 - PP_3976 0.18 +0.0
4,483,873 + PP_3976 0.30 +0.3
4,483,873 + PP_3976 0.30 -0.2
4,483,873 + PP_3976 0.30 -0.2
4,483,874 - PP_3976 0.30 +0.4
4,483,874 - PP_3976 0.30 -0.1
4,483,874 - PP_3976 0.30 +0.3
4,483,878 - PP_3976 0.30 +0.4

Or see this region's nucleotide sequence