Strain Fitness in Pseudomonas putida KT2440 around PP_2866

Experiment: Growth at 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_2865 and PP_2866 are separated by 133 nucleotidesPP_2866 and PP_2867 are separated by 68 nucleotides PP_2865: PP_2865 - Transcriptional regulator, LysR family, at 3,266,494 to 3,267,396 _2865 PP_2866: PP_2866 - FMN-dependent NADH-azoreductase 1, at 3,267,530 to 3,268,141 _2866 PP_2867: PP_2867 - Pyridine nucleotide-disulphide oxidoreductase family protein, at 3,268,210 to 3,269,412 _2867 Position (kb) 3267 3268 3269Strain fitness (log2 ratio) -2 -1 0 1 2at 3266.601 kb on - strand, within PP_2865at 3266.707 kb on + strand, within PP_2865at 3266.719 kb on - strand, within PP_2865at 3266.722 kb on + strand, within PP_2865at 3266.722 kb on + strand, within PP_2865at 3266.722 kb on + strand, within PP_2865at 3266.723 kb on - strand, within PP_2865at 3266.803 kb on + strand, within PP_2865at 3266.803 kb on + strand, within PP_2865at 3266.963 kb on - strand, within PP_2865at 3267.019 kb on + strand, within PP_2865at 3267.019 kb on + strand, within PP_2865at 3267.020 kb on - strand, within PP_2865at 3267.020 kb on - strand, within PP_2865at 3267.020 kb on - strand, within PP_2865at 3267.020 kb on - strand, within PP_2865at 3267.020 kb on - strand, within PP_2865at 3267.115 kb on + strand, within PP_2865at 3267.115 kb on + strand, within PP_2865at 3267.203 kb on + strand, within PP_2865at 3267.203 kb on + strand, within PP_2865at 3267.203 kb on + strand, within PP_2865at 3267.204 kb on - strand, within PP_2865at 3267.204 kb on - strand, within PP_2865at 3267.204 kb on - strand, within PP_2865at 3267.204 kb on - strand, within PP_2865at 3267.385 kb on - strandat 3267.385 kb on - strandat 3267.720 kb on + strand, within PP_2866at 3267.720 kb on + strand, within PP_2866at 3267.721 kb on - strand, within PP_2866at 3267.815 kb on + strand, within PP_2866at 3267.815 kb on + strand, within PP_2866at 3267.815 kb on + strand, within PP_2866at 3267.816 kb on - strand, within PP_2866at 3267.888 kb on - strand, within PP_2866at 3268.064 kb on + strand, within PP_2866at 3268.065 kb on - strand, within PP_2866at 3268.201 kb on + strandat 3268.274 kb on + strandat 3268.364 kb on + strand, within PP_2867at 3268.365 kb on - strand, within PP_2867at 3268.403 kb on + strand, within PP_2867at 3268.404 kb on - strand, within PP_2867at 3268.418 kb on + strand, within PP_2867at 3268.538 kb on + strand, within PP_2867at 3268.538 kb on + strand, within PP_2867at 3268.538 kb on + strand, within PP_2867at 3268.559 kb on + strand, within PP_2867at 3268.742 kb on - strand, within PP_2867at 3268.742 kb on - strand, within PP_2867at 3268.742 kb on - strand, within PP_2867at 3268.849 kb on + strand, within PP_2867at 3268.849 kb on + strand, within PP_2867at 3268.855 kb on + strand, within PP_2867at 3268.882 kb on + strand, within PP_2867at 3268.929 kb on + strand, within PP_2867at 3269.111 kb on + strand, within PP_2867

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 30C
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3,266,601 - PP_2865 0.12 +0.2
3,266,707 + PP_2865 0.24 -0.7
3,266,719 - PP_2865 0.25 +0.4
3,266,722 + PP_2865 0.25 +0.2
3,266,722 + PP_2865 0.25 -0.3
3,266,722 + PP_2865 0.25 -0.3
3,266,723 - PP_2865 0.25 -0.4
3,266,803 + PP_2865 0.34 -0.3
3,266,803 + PP_2865 0.34 -0.2
3,266,963 - PP_2865 0.52 -1.5
3,267,019 + PP_2865 0.58 -2.7
3,267,019 + PP_2865 0.58 +0.2
3,267,020 - PP_2865 0.58 +0.8
3,267,020 - PP_2865 0.58 -0.2
3,267,020 - PP_2865 0.58 -0.0
3,267,020 - PP_2865 0.58 +0.3
3,267,020 - PP_2865 0.58 +1.2
3,267,115 + PP_2865 0.69 -0.4
3,267,115 + PP_2865 0.69 +0.2
3,267,203 + PP_2865 0.79 -2.3
3,267,203 + PP_2865 0.79 +0.1
3,267,203 + PP_2865 0.79 +0.1
3,267,204 - PP_2865 0.79 -1.9
3,267,204 - PP_2865 0.79 +0.7
3,267,204 - PP_2865 0.79 -0.7
3,267,204 - PP_2865 0.79 +1.3
3,267,385 - +1.1
3,267,385 - +0.5
3,267,720 + PP_2866 0.31 -0.1
3,267,720 + PP_2866 0.31 +1.0
3,267,721 - PP_2866 0.31 +1.0
3,267,815 + PP_2866 0.47 -0.1
3,267,815 + PP_2866 0.47 +0.7
3,267,815 + PP_2866 0.47 -0.3
3,267,816 - PP_2866 0.47 +1.4
3,267,888 - PP_2866 0.58 -0.2
3,268,064 + PP_2866 0.87 +0.2
3,268,065 - PP_2866 0.87 +0.4
3,268,201 + -0.2
3,268,274 + -0.5
3,268,364 + PP_2867 0.13 -0.3
3,268,365 - PP_2867 0.13 +0.7
3,268,403 + PP_2867 0.16 +0.2
3,268,404 - PP_2867 0.16 +1.1
3,268,418 + PP_2867 0.17 +0.1
3,268,538 + PP_2867 0.27 +0.5
3,268,538 + PP_2867 0.27 -0.7
3,268,538 + PP_2867 0.27 +1.2
3,268,559 + PP_2867 0.29 +1.5
3,268,742 - PP_2867 0.44 -0.4
3,268,742 - PP_2867 0.44 +2.4
3,268,742 - PP_2867 0.44 -0.5
3,268,849 + PP_2867 0.53 +0.7
3,268,849 + PP_2867 0.53 -0.2
3,268,855 + PP_2867 0.54 -0.2
3,268,882 + PP_2867 0.56 +0.0
3,268,929 + PP_2867 0.60 +0.0
3,269,111 + PP_2867 0.75 -1.2

Or see this region's nucleotide sequence