Experiment: Growth at 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0802 and PP_0803 are separated by 92 nucleotides PP_0803 and PP_0804 overlap by 4 nucleotides
PP_0802: PP_0802 - putative chemotaxis protein, at 920,851 to 921,750
_0802
PP_0803: PP_0803 - Protein secretion ABC efflux system, membrane fusion protein, at 921,843 to 923,027
_0803
PP_0804: PP_0804 - Protein secretion ABC efflux system, permease and ATP-binding protein, at 923,024 to 925,192
_0804
Position (kb) 921
922
923
924 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 920.847 kb on + strand at 920.847 kb on + strand at 920.847 kb on + strand at 920.848 kb on - strand at 920.848 kb on - strand at 920.848 kb on - strand at 920.849 kb on + strand at 920.849 kb on + strand at 920.849 kb on + strand at 920.849 kb on + strand at 920.849 kb on + strand at 920.849 kb on + strand at 920.850 kb on - strand at 920.925 kb on + strand at 921.002 kb on + strand, within PP_0802 at 921.002 kb on + strand, within PP_0802 at 921.002 kb on + strand, within PP_0802 at 921.002 kb on + strand, within PP_0802 at 921.003 kb on - strand, within PP_0802 at 921.237 kb on + strand, within PP_0802 at 921.237 kb on + strand, within PP_0802 at 921.319 kb on + strand, within PP_0802 at 921.460 kb on + strand, within PP_0802 at 921.461 kb on - strand, within PP_0802 at 921.461 kb on - strand, within PP_0802 at 921.601 kb on + strand, within PP_0802 at 921.601 kb on + strand, within PP_0802 at 921.602 kb on - strand, within PP_0802 at 921.602 kb on - strand, within PP_0802 at 922.021 kb on + strand, within PP_0803 at 922.021 kb on + strand, within PP_0803 at 922.068 kb on + strand, within PP_0803 at 922.093 kb on + strand, within PP_0803 at 922.094 kb on - strand, within PP_0803 at 922.094 kb on - strand, within PP_0803 at 922.096 kb on - strand, within PP_0803 at 922.096 kb on - strand, within PP_0803 at 922.103 kb on - strand, within PP_0803 at 922.103 kb on - strand, within PP_0803 at 922.108 kb on + strand, within PP_0803 at 922.108 kb on + strand, within PP_0803 at 922.109 kb on - strand, within PP_0803 at 922.400 kb on - strand, within PP_0803 at 922.588 kb on + strand, within PP_0803 at 922.588 kb on + strand, within PP_0803 at 922.589 kb on - strand, within PP_0803 at 922.589 kb on - strand, within PP_0803 at 922.706 kb on - strand, within PP_0803 at 922.999 kb on + strand at 923.000 kb on - strand at 923.158 kb on + strand at 923.682 kb on + strand, within PP_0804 at 923.683 kb on - strand, within PP_0804
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at 30C remove 920,847 + +0.4 920,847 + +2.0 920,847 + -3.3 920,848 - -1.0 920,848 - +0.1 920,848 - -0.0 920,849 + -0.7 920,849 + -0.8 920,849 + -1.6 920,849 + -0.4 920,849 + +0.9 920,849 + +0.7 920,850 - -1.6 920,925 + +2.1 921,002 + PP_0802 0.17 +1.5 921,002 + PP_0802 0.17 -0.5 921,002 + PP_0802 0.17 +0.4 921,002 + PP_0802 0.17 -0.8 921,003 - PP_0802 0.17 +0.6 921,237 + PP_0802 0.43 -0.9 921,237 + PP_0802 0.43 +0.2 921,319 + PP_0802 0.52 -0.3 921,460 + PP_0802 0.68 +0.5 921,461 - PP_0802 0.68 -1.8 921,461 - PP_0802 0.68 +0.4 921,601 + PP_0802 0.83 +0.2 921,601 + PP_0802 0.83 -1.2 921,602 - PP_0802 0.83 +0.2 921,602 - PP_0802 0.83 +0.0 922,021 + PP_0803 0.15 +1.7 922,021 + PP_0803 0.15 +1.0 922,068 + PP_0803 0.19 +0.7 922,093 + PP_0803 0.21 +0.9 922,094 - PP_0803 0.21 +1.7 922,094 - PP_0803 0.21 +0.9 922,096 - PP_0803 0.21 +1.1 922,096 - PP_0803 0.21 +1.1 922,103 - PP_0803 0.22 +0.6 922,103 - PP_0803 0.22 +0.0 922,108 + PP_0803 0.22 +1.0 922,108 + PP_0803 0.22 +0.7 922,109 - PP_0803 0.22 +1.2 922,400 - PP_0803 0.47 +1.4 922,588 + PP_0803 0.63 +0.7 922,588 + PP_0803 0.63 +0.4 922,589 - PP_0803 0.63 +1.1 922,589 - PP_0803 0.63 +0.8 922,706 - PP_0803 0.73 +0.4 922,999 + +0.7 923,000 - +1.0 923,158 + +2.0 923,682 + PP_0804 0.30 +0.6 923,683 - PP_0804 0.30 +1.1
Or see this region's nucleotide sequence