Strain Fitness in Pseudomonas putida KT2440 around PP_0699

Experiment: Growth at 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0698 and PP_0699 are separated by 227 nucleotidesPP_0699 and PP_t70 are separated by 130 nucleotidesPP_t70 and PP_0700 are separated by 95 nucleotides PP_0698: PP_0698 - Transcriptional regulator, LysR family, at 811,334 to 812,251 _0698 PP_0699: PP_0699 - Transporter, LysE family, at 812,479 to 813,093 _0699 PP_t70: PP_t70 - tRNA-Met, at 813,224 to 813,300 _t70 PP_0700: PP_0700 - putative Transmembrane sensor, at 813,396 to 814,382 _0700 Position (kb) 812 813 814Strain fitness (log2 ratio) -2 -1 0 1 2at 811.485 kb on + strand, within PP_0698at 811.611 kb on + strand, within PP_0698at 811.612 kb on - strand, within PP_0698at 811.788 kb on + strand, within PP_0698at 811.788 kb on + strand, within PP_0698at 811.788 kb on + strand, within PP_0698at 811.789 kb on - strand, within PP_0698at 811.789 kb on - strand, within PP_0698at 811.789 kb on - strandat 812.135 kb on + strand, within PP_0698at 812.136 kb on - strand, within PP_0698at 812.136 kb on - strand, within PP_0698at 812.136 kb on - strand, within PP_0698at 812.136 kb on - strand, within PP_0698at 812.136 kb on - strand, within PP_0698at 812.301 kb on - strandat 812.301 kb on - strandat 812.301 kb on - strandat 812.312 kb on + strandat 812.312 kb on + strandat 812.312 kb on + strandat 812.312 kb on + strandat 812.313 kb on - strandat 812.313 kb on - strandat 812.313 kb on - strandat 812.313 kb on - strandat 812.323 kb on - strandat 812.361 kb on + strandat 812.362 kb on - strandat 812.362 kb on - strandat 812.362 kb on - strandat 812.366 kb on - strandat 812.401 kb on - strandat 812.422 kb on + strandat 812.638 kb on + strand, within PP_0699at 812.638 kb on + strand, within PP_0699at 812.638 kb on + strand, within PP_0699at 812.638 kb on + strand, within PP_0699at 812.639 kb on - strandat 812.639 kb on - strand, within PP_0699at 812.734 kb on + strand, within PP_0699at 812.735 kb on - strand, within PP_0699at 812.735 kb on - strand, within PP_0699at 812.760 kb on + strand, within PP_0699at 812.760 kb on + strand, within PP_0699at 812.798 kb on + strand, within PP_0699at 812.986 kb on - strand, within PP_0699at 813.086 kb on + strandat 813.086 kb on + strandat 813.086 kb on + strandat 813.086 kb on + strandat 813.087 kb on - strandat 813.103 kb on - strandat 813.504 kb on + strand, within PP_0700at 813.505 kb on - strand, within PP_0700at 813.650 kb on + strand, within PP_0700at 813.651 kb on - strand, within PP_0700at 813.651 kb on - strand, within PP_0700at 813.783 kb on + strand, within PP_0700at 813.784 kb on - strand, within PP_0700at 813.802 kb on + strand, within PP_0700at 813.803 kb on - strand, within PP_0700at 813.803 kb on - strand, within PP_0700at 813.804 kb on + strand, within PP_0700at 813.805 kb on - strand, within PP_0700at 813.805 kb on - strand, within PP_0700at 813.972 kb on + strand, within PP_0700at 813.972 kb on + strand, within PP_0700at 813.972 kb on + strand, within PP_0700at 813.973 kb on - strand, within PP_0700at 814.037 kb on - strand, within PP_0700at 814.037 kb on - strand, within PP_0700at 814.042 kb on + strand, within PP_0700at 814.043 kb on - strand, within PP_0700at 814.043 kb on - strand, within PP_0700

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 30C
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811,485 + PP_0698 0.16 -0.3
811,611 + PP_0698 0.30 -1.5
811,612 - PP_0698 0.30 +0.4
811,788 + PP_0698 0.49 -0.7
811,788 + PP_0698 0.49 -0.4
811,788 + PP_0698 0.49 +0.8
811,789 - PP_0698 0.50 +0.3
811,789 - PP_0698 0.50 -0.3
811,789 - +0.0
812,135 + PP_0698 0.87 +0.5
812,136 - PP_0698 0.87 +1.8
812,136 - PP_0698 0.87 +0.9
812,136 - PP_0698 0.87 -0.5
812,136 - PP_0698 0.87 +0.7
812,136 - PP_0698 0.87 +0.7
812,301 - +0.5
812,301 - +0.2
812,301 - -0.0
812,312 + +0.5
812,312 + -0.4
812,312 + +0.3
812,312 + +0.8
812,313 - -1.7
812,313 - +0.2
812,313 - -0.1
812,313 - +0.1
812,323 - -1.1
812,361 + -0.3
812,362 - -1.0
812,362 - -0.1
812,362 - +0.1
812,366 - +0.6
812,401 - -0.8
812,422 + +0.4
812,638 + PP_0699 0.26 +0.3
812,638 + PP_0699 0.26 +0.4
812,638 + PP_0699 0.26 +0.7
812,638 + PP_0699 0.26 -0.7
812,639 - +0.6
812,639 - PP_0699 0.26 +0.3
812,734 + PP_0699 0.41 +0.1
812,735 - PP_0699 0.42 +1.0
812,735 - PP_0699 0.42 +0.3
812,760 + PP_0699 0.46 +0.4
812,760 + PP_0699 0.46 +2.0
812,798 + PP_0699 0.52 -0.3
812,986 - PP_0699 0.82 +1.1
813,086 + +0.6
813,086 + -1.1
813,086 + +0.8
813,086 + -0.5
813,087 - -1.3
813,103 - +0.1
813,504 + PP_0700 0.11 +0.4
813,505 - PP_0700 0.11 +0.7
813,650 + PP_0700 0.26 +0.1
813,651 - PP_0700 0.26 +0.1
813,651 - PP_0700 0.26 -2.6
813,783 + PP_0700 0.39 -1.1
813,784 - PP_0700 0.39 -0.6
813,802 + PP_0700 0.41 -0.1
813,803 - PP_0700 0.41 +0.1
813,803 - PP_0700 0.41 +1.4
813,804 + PP_0700 0.41 +1.1
813,805 - PP_0700 0.41 -2.7
813,805 - PP_0700 0.41 +0.1
813,972 + PP_0700 0.58 -0.1
813,972 + PP_0700 0.58 +0.8
813,972 + PP_0700 0.58 +0.5
813,973 - PP_0700 0.58 +0.3
814,037 - PP_0700 0.65 -0.6
814,037 - PP_0700 0.65 -1.6
814,042 + PP_0700 0.65 +0.2
814,043 - PP_0700 0.66 -0.0
814,043 - PP_0700 0.66 +1.3

Or see this region's nucleotide sequence