Experiment: Growth at 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3895 and PP_3896 are separated by 87 nucleotides PP_3896 and PP_3897 are separated by 57 nucleotides PP_3897 and PP_3898 are separated by 43 nucleotides PP_3898 and PP_5643 are separated by 166 nucleotides
PP_3895: PP_3895 - putative Regulatory protein Cro, at 4,411,465 to 4,411,677
_3895
PP_3896: PP_3896 - Transcriptional regulator, Cro/CI family, at 4,411,765 to 4,412,412
_3896
PP_3897: PP_3897 - conserved protein of unknown function, at 4,412,470 to 4,412,883
_3897
PP_3898: PP_3898 - conserved protein of unknown function, at 4,412,927 to 4,413,163
_3898
PP_5643: PP_5643 - conserved protein of unknown function, at 4,413,330 to 4,414,322
_5643
Position (kb) 4412
4413 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4411.668 kb on + strand at 4411.764 kb on + strand at 4412.431 kb on + strand at 4412.432 kb on - strand at 4412.432 kb on - strand at 4412.432 kb on - strand at 4412.488 kb on + strand at 4412.489 kb on - strand at 4412.514 kb on - strand, within PP_3897 at 4412.586 kb on + strand, within PP_3897 at 4412.586 kb on + strand, within PP_3897 at 4412.586 kb on + strand, within PP_3897 at 4412.587 kb on - strand, within PP_3897 at 4412.647 kb on + strand, within PP_3897 at 4412.648 kb on - strand, within PP_3897 at 4412.651 kb on + strand, within PP_3897 at 4412.651 kb on + strand, within PP_3897 at 4412.651 kb on + strand, within PP_3897 at 4412.651 kb on + strand, within PP_3897 at 4412.651 kb on + strand, within PP_3897 at 4412.651 kb on + strand, within PP_3897 at 4412.652 kb on - strand, within PP_3897 at 4412.652 kb on - strand, within PP_3897 at 4412.652 kb on - strand, within PP_3897 at 4412.652 kb on - strand, within PP_3897 at 4412.683 kb on + strand, within PP_3897 at 4412.701 kb on + strand, within PP_3897 at 4412.701 kb on + strand, within PP_3897 at 4412.701 kb on + strand, within PP_3897 at 4412.770 kb on + strand, within PP_3897 at 4412.770 kb on + strand, within PP_3897 at 4412.771 kb on - strand, within PP_3897 at 4412.771 kb on - strand, within PP_3897 at 4412.771 kb on - strand, within PP_3897 at 4412.771 kb on - strand, within PP_3897 at 4412.771 kb on - strand, within PP_3897 at 4412.771 kb on - strand, within PP_3897 at 4412.887 kb on + strand at 4412.888 kb on - strand at 4412.888 kb on - strand at 4412.888 kb on - strand at 4412.901 kb on + strand at 4413.010 kb on - strand, within PP_3898 at 4413.010 kb on - strand, within PP_3898 at 4413.010 kb on - strand, within PP_3898 at 4413.116 kb on + strand, within PP_3898 at 4413.116 kb on + strand, within PP_3898 at 4413.117 kb on - strand, within PP_3898 at 4413.176 kb on + strand at 4413.176 kb on + strand at 4413.177 kb on - strand at 4413.215 kb on + strand at 4413.216 kb on - strand at 4413.216 kb on - strand at 4413.216 kb on - strand at 4413.218 kb on + strand at 4413.219 kb on - strand at 4413.357 kb on - strand at 4413.372 kb on + strand at 4413.381 kb on - strand at 4413.545 kb on + strand, within PP_5643 at 4413.631 kb on + strand, within PP_5643 at 4413.679 kb on + strand, within PP_5643 at 4413.683 kb on - strand, within PP_5643 at 4413.714 kb on + strand, within PP_5643 at 4413.719 kb on - strand, within PP_5643 at 4413.722 kb on + strand, within PP_5643 at 4413.863 kb on + strand, within PP_5643 at 4413.864 kb on - strand, within PP_5643
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at 30C remove 4,411,668 + +1.1 4,411,764 + +1.2 4,412,431 + -3.7 4,412,432 - +0.8 4,412,432 - +0.4 4,412,432 - +1.1 4,412,488 + -1.3 4,412,489 - +1.1 4,412,514 - PP_3897 0.11 -3.2 4,412,586 + PP_3897 0.28 +0.6 4,412,586 + PP_3897 0.28 -0.3 4,412,586 + PP_3897 0.28 +0.1 4,412,587 - PP_3897 0.28 +1.7 4,412,647 + PP_3897 0.43 -0.8 4,412,648 - PP_3897 0.43 -1.1 4,412,651 + PP_3897 0.44 +0.9 4,412,651 + PP_3897 0.44 +1.1 4,412,651 + PP_3897 0.44 +0.5 4,412,651 + PP_3897 0.44 -0.9 4,412,651 + PP_3897 0.44 -0.8 4,412,651 + PP_3897 0.44 -0.2 4,412,652 - PP_3897 0.44 -1.8 4,412,652 - PP_3897 0.44 -1.2 4,412,652 - PP_3897 0.44 +0.6 4,412,652 - PP_3897 0.44 +0.7 4,412,683 + PP_3897 0.51 -0.5 4,412,701 + PP_3897 0.56 -3.9 4,412,701 + PP_3897 0.56 -1.2 4,412,701 + PP_3897 0.56 -1.1 4,412,770 + PP_3897 0.72 -0.8 4,412,770 + PP_3897 0.72 -2.0 4,412,771 - PP_3897 0.73 -0.3 4,412,771 - PP_3897 0.73 -0.6 4,412,771 - PP_3897 0.73 +0.8 4,412,771 - PP_3897 0.73 -0.6 4,412,771 - PP_3897 0.73 -1.9 4,412,771 - PP_3897 0.73 -2.2 4,412,887 + -0.1 4,412,888 - +0.5 4,412,888 - +0.5 4,412,888 - -1.0 4,412,901 + -1.8 4,413,010 - PP_3898 0.35 +0.7 4,413,010 - PP_3898 0.35 -0.7 4,413,010 - PP_3898 0.35 +0.3 4,413,116 + PP_3898 0.80 -0.3 4,413,116 + PP_3898 0.80 +0.2 4,413,117 - PP_3898 0.80 -0.2 4,413,176 + -1.0 4,413,176 + -0.2 4,413,177 - -1.2 4,413,215 + -0.2 4,413,216 - +0.3 4,413,216 - -0.3 4,413,216 - +1.5 4,413,218 + +1.7 4,413,219 - +0.3 4,413,357 - -0.4 4,413,372 + +0.1 4,413,381 - +0.9 4,413,545 + PP_5643 0.22 +1.9 4,413,631 + PP_5643 0.30 +0.0 4,413,679 + PP_5643 0.35 -1.6 4,413,683 - PP_5643 0.36 +1.0 4,413,714 + PP_5643 0.39 +0.9 4,413,719 - PP_5643 0.39 +0.9 4,413,722 + PP_5643 0.39 +1.0 4,413,863 + PP_5643 0.54 -1.5 4,413,864 - PP_5643 0.54 -0.8
Or see this region's nucleotide sequence