Strain Fitness in Pseudomonas putida KT2440 around PP_3782

Experiment: Growth at 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3781 and PP_3782 are separated by 26 nucleotidesPP_3782 and PP_3783 are separated by 12 nucleotides PP_3781: PP_3781 - Oxygen-independent Coproporphyrinogen III oxidase family protein, at 4,308,595 to 4,310,010 _3781 PP_3782: PP_3782 - conserved protein of unknown function, at 4,310,037 to 4,310,276 _3782 PP_3783: PP_3783 - syringomycin biosynthesis enzyme 2, at 4,310,289 to 4,311,224 _3783 Position (kb) 4310 4311Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4309.273 kb on - strand, within PP_3781at 4309.286 kb on + strand, within PP_3781at 4309.286 kb on + strand, within PP_3781at 4309.286 kb on + strand, within PP_3781at 4309.286 kb on + strand, within PP_3781at 4309.286 kb on + strand, within PP_3781at 4309.286 kb on + strand, within PP_3781at 4309.287 kb on - strand, within PP_3781at 4309.287 kb on - strand, within PP_3781at 4309.287 kb on - strand, within PP_3781at 4309.287 kb on - strandat 4309.287 kb on - strand, within PP_3781at 4309.288 kb on + strand, within PP_3781at 4309.288 kb on + strand, within PP_3781at 4309.288 kb on + strand, within PP_3781at 4309.289 kb on - strand, within PP_3781at 4309.289 kb on - strand, within PP_3781at 4309.373 kb on - strand, within PP_3781at 4309.385 kb on + strand, within PP_3781at 4309.405 kb on + strand, within PP_3781at 4309.447 kb on + strand, within PP_3781at 4309.465 kb on + strand, within PP_3781at 4309.466 kb on - strand, within PP_3781at 4309.530 kb on + strand, within PP_3781at 4309.530 kb on + strand, within PP_3781at 4309.531 kb on - strand, within PP_3781at 4309.587 kb on + strand, within PP_3781at 4309.587 kb on + strand, within PP_3781at 4309.587 kb on + strand, within PP_3781at 4309.601 kb on - strand, within PP_3781at 4309.765 kb on + strand, within PP_3781at 4309.765 kb on + strand, within PP_3781at 4309.766 kb on - strand, within PP_3781at 4309.766 kb on - strand, within PP_3781at 4309.766 kb on - strand, within PP_3781at 4309.766 kb on - strand, within PP_3781at 4309.821 kb on - strand, within PP_3781at 4309.978 kb on - strandat 4309.987 kb on - strandat 4310.065 kb on + strand, within PP_3782at 4310.065 kb on + strand, within PP_3782at 4310.066 kb on - strand, within PP_3782at 4310.066 kb on - strand, within PP_3782at 4310.068 kb on + strand, within PP_3782at 4310.069 kb on - strand, within PP_3782at 4310.069 kb on - strand, within PP_3782at 4310.093 kb on - strand, within PP_3782at 4310.143 kb on + strand, within PP_3782at 4310.168 kb on + strand, within PP_3782at 4310.168 kb on + strand, within PP_3782at 4310.169 kb on - strand, within PP_3782at 4310.169 kb on - strand, within PP_3782at 4310.287 kb on + strandat 4310.352 kb on + strandat 4310.352 kb on + strandat 4310.353 kb on - strandat 4310.353 kb on - strandat 4310.353 kb on - strandat 4310.356 kb on + strandat 4310.356 kb on + strandat 4310.356 kb on + strandat 4310.357 kb on - strandat 4310.373 kb on + strandat 4310.374 kb on - strandat 4310.374 kb on - strandat 4310.484 kb on + strand, within PP_3783at 4310.484 kb on + strand, within PP_3783at 4310.743 kb on + strand, within PP_3783at 4310.743 kb on + strand, within PP_3783at 4310.799 kb on + strand, within PP_3783at 4310.799 kb on + strand, within PP_3783at 4310.800 kb on - strand, within PP_3783at 4310.874 kb on + strand, within PP_3783at 4310.874 kb on + strand, within PP_3783at 4310.874 kb on + strand, within PP_3783at 4310.874 kb on + strand, within PP_3783at 4310.875 kb on - strand, within PP_3783at 4310.875 kb on - strand, within PP_3783at 4310.875 kb on - strand, within PP_3783at 4310.875 kb on - strand, within PP_3783at 4310.875 kb on - strand, within PP_3783at 4310.875 kb on - strand, within PP_3783at 4310.875 kb on - strand, within PP_3783at 4310.881 kb on - strand, within PP_3783at 4310.903 kb on - strand, within PP_3783at 4310.940 kb on + strand, within PP_3783at 4310.940 kb on + strand, within PP_3783at 4310.941 kb on - strand, within PP_3783at 4310.941 kb on - strand, within PP_3783at 4310.941 kb on - strand, within PP_3783at 4310.941 kb on - strand, within PP_3783at 4311.039 kb on + strand, within PP_3783at 4311.039 kb on + strand, within PP_3783at 4311.052 kb on - strand, within PP_3783at 4311.052 kb on - strand, within PP_3783at 4311.129 kb on + strand, within PP_3783at 4311.129 kb on + strand, within PP_3783at 4311.130 kb on - strand, within PP_3783at 4311.130 kb on - strand, within PP_3783

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 30C
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4,309,273 - PP_3781 0.48 +2.1
4,309,286 + PP_3781 0.49 -0.5
4,309,286 + PP_3781 0.49 -3.3
4,309,286 + PP_3781 0.49 +1.0
4,309,286 + PP_3781 0.49 +0.0
4,309,286 + PP_3781 0.49 +0.9
4,309,286 + PP_3781 0.49 +1.0
4,309,287 - PP_3781 0.49 -0.2
4,309,287 - PP_3781 0.49 -2.0
4,309,287 - PP_3781 0.49 +0.3
4,309,287 - -0.9
4,309,287 - PP_3781 0.49 +0.5
4,309,288 + PP_3781 0.49 +2.2
4,309,288 + PP_3781 0.49 +0.9
4,309,288 + PP_3781 0.49 -1.3
4,309,289 - PP_3781 0.49 -0.9
4,309,289 - PP_3781 0.49 +0.0
4,309,373 - PP_3781 0.55 +0.2
4,309,385 + PP_3781 0.56 +1.2
4,309,405 + PP_3781 0.57 -1.0
4,309,447 + PP_3781 0.60 -0.3
4,309,465 + PP_3781 0.61 -0.5
4,309,466 - PP_3781 0.62 -0.6
4,309,530 + PP_3781 0.66 +0.1
4,309,530 + PP_3781 0.66 -1.2
4,309,531 - PP_3781 0.66 +0.2
4,309,587 + PP_3781 0.70 -2.9
4,309,587 + PP_3781 0.70 +0.2
4,309,587 + PP_3781 0.70 +0.1
4,309,601 - PP_3781 0.71 -1.2
4,309,765 + PP_3781 0.83 +1.4
4,309,765 + PP_3781 0.83 +0.8
4,309,766 - PP_3781 0.83 +0.3
4,309,766 - PP_3781 0.83 +0.5
4,309,766 - PP_3781 0.83 +0.1
4,309,766 - PP_3781 0.83 +0.6
4,309,821 - PP_3781 0.87 +0.1
4,309,978 - +0.6
4,309,987 - -1.5
4,310,065 + PP_3782 0.12 +0.5
4,310,065 + PP_3782 0.12 -3.8
4,310,066 - PP_3782 0.12 -0.9
4,310,066 - PP_3782 0.12 +1.8
4,310,068 + PP_3782 0.13 +1.4
4,310,069 - PP_3782 0.13 -1.0
4,310,069 - PP_3782 0.13 +2.2
4,310,093 - PP_3782 0.23 +0.2
4,310,143 + PP_3782 0.44 -0.7
4,310,168 + PP_3782 0.55 +0.7
4,310,168 + PP_3782 0.55 +1.2
4,310,169 - PP_3782 0.55 -0.1
4,310,169 - PP_3782 0.55 +1.0
4,310,287 + -0.2
4,310,352 + +0.9
4,310,352 + -1.1
4,310,353 - -2.3
4,310,353 - +0.6
4,310,353 - -0.3
4,310,356 + +0.0
4,310,356 + -1.3
4,310,356 + -1.4
4,310,357 - +0.9
4,310,373 + +0.7
4,310,374 - +0.3
4,310,374 - +1.2
4,310,484 + PP_3783 0.21 -0.8
4,310,484 + PP_3783 0.21 +0.5
4,310,743 + PP_3783 0.49 -0.3
4,310,743 + PP_3783 0.49 -0.6
4,310,799 + PP_3783 0.54 -0.9
4,310,799 + PP_3783 0.54 -2.9
4,310,800 - PP_3783 0.55 -0.5
4,310,874 + PP_3783 0.62 +0.3
4,310,874 + PP_3783 0.62 +1.9
4,310,874 + PP_3783 0.62 -0.1
4,310,874 + PP_3783 0.62 +0.6
4,310,875 - PP_3783 0.63 -0.3
4,310,875 - PP_3783 0.63 -0.7
4,310,875 - PP_3783 0.63 +0.6
4,310,875 - PP_3783 0.63 -0.4
4,310,875 - PP_3783 0.63 +0.7
4,310,875 - PP_3783 0.63 -4.1
4,310,875 - PP_3783 0.63 +0.2
4,310,881 - PP_3783 0.63 +1.1
4,310,903 - PP_3783 0.66 +0.4
4,310,940 + PP_3783 0.70 -0.1
4,310,940 + PP_3783 0.70 -0.0
4,310,941 - PP_3783 0.70 +1.1
4,310,941 - PP_3783 0.70 -1.5
4,310,941 - PP_3783 0.70 -1.1
4,310,941 - PP_3783 0.70 +0.4
4,311,039 + PP_3783 0.80 -1.1
4,311,039 + PP_3783 0.80 -0.2
4,311,052 - PP_3783 0.82 +1.0
4,311,052 - PP_3783 0.82 +0.4
4,311,129 + PP_3783 0.90 +1.9
4,311,129 + PP_3783 0.90 +0.5
4,311,130 - PP_3783 0.90 +1.0
4,311,130 - PP_3783 0.90 +0.1

Or see this region's nucleotide sequence