Strain Fitness in Pseudomonas putida KT2440 around PP_1397

Experiment: Growth at 30C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_1395 and PP_1396 are separated by 202 nucleotidesPP_1396 and PP_1397 are separated by 16 nucleotidesPP_1397 and PP_1398 are separated by 0 nucleotidesPP_1398 and PP_1399 are separated by 119 nucleotides PP_1395: PP_1395 - Transcriptional regulator, AraC family, at 1,590,973 to 1,591,893 _1395 PP_1396: PP_1396 - conserved protein of unknown function, at 1,592,096 to 1,592,389 _1396 PP_1397: PP_1397 - conserved protein of unknown function, at 1,592,406 to 1,592,672 _1397 PP_1398: PP_1398 - conserved protein of unknown function, at 1,592,673 to 1,593,278 _1398 PP_1399: PP_1399 - conserved exported protein of unknown function, at 1,593,398 to 1,593,802 _1399 Position (kb) 1592 1593Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1591.478 kb on + strand, within PP_1395at 1591.479 kb on - strand, within PP_1395at 1591.479 kb on - strand, within PP_1395at 1591.646 kb on + strand, within PP_1395at 1591.646 kb on + strand, within PP_1395at 1591.646 kb on + strand, within PP_1395at 1591.646 kb on + strand, within PP_1395at 1591.646 kb on + strand, within PP_1395at 1591.646 kb on + strand, within PP_1395at 1591.646 kb on + strand, within PP_1395at 1591.646 kb on + strand, within PP_1395at 1591.647 kb on - strand, within PP_1395at 1591.647 kb on - strand, within PP_1395at 1591.647 kb on - strand, within PP_1395at 1591.647 kb on - strand, within PP_1395at 1591.647 kb on - strand, within PP_1395at 1591.647 kb on - strand, within PP_1395at 1591.647 kb on - strand, within PP_1395at 1591.647 kb on - strand, within PP_1395at 1591.647 kb on - strand, within PP_1395at 1591.647 kb on - strand, within PP_1395at 1591.647 kb on - strand, within PP_1395at 1591.667 kb on + strand, within PP_1395at 1591.667 kb on + strand, within PP_1395at 1591.667 kb on + strand, within PP_1395at 1591.668 kb on - strand, within PP_1395at 1591.741 kb on + strand, within PP_1395at 1591.750 kb on + strand, within PP_1395at 1591.763 kb on + strand, within PP_1395at 1591.764 kb on - strand, within PP_1395at 1591.775 kb on + strand, within PP_1395at 1591.775 kb on + strand, within PP_1395at 1591.776 kb on - strand, within PP_1395at 1591.924 kb on + strandat 1591.924 kb on + strandat 1591.924 kb on + strandat 1591.925 kb on - strandat 1591.925 kb on - strandat 1591.925 kb on - strandat 1591.925 kb on - strandat 1591.925 kb on - strandat 1592.013 kb on + strandat 1592.013 kb on + strandat 1592.014 kb on - strandat 1592.104 kb on + strandat 1592.204 kb on - strand, within PP_1396at 1592.204 kb on - strand, within PP_1396at 1592.303 kb on + strand, within PP_1396at 1592.303 kb on + strand, within PP_1396at 1592.303 kb on + strand, within PP_1396at 1592.303 kb on + strand, within PP_1396at 1592.304 kb on - strand, within PP_1396at 1592.377 kb on + strandat 1592.377 kb on + strandat 1592.377 kb on + strandat 1592.377 kb on + strandat 1592.378 kb on - strandat 1592.402 kb on + strandat 1592.403 kb on - strandat 1592.403 kb on - strandat 1592.447 kb on + strand, within PP_1397at 1592.448 kb on - strand, within PP_1397at 1592.448 kb on - strand, within PP_1397at 1592.448 kb on - strand, within PP_1397at 1592.720 kb on - strandat 1592.770 kb on + strand, within PP_1398at 1592.770 kb on + strand, within PP_1398at 1592.770 kb on + strand, within PP_1398at 1592.771 kb on - strand, within PP_1398at 1592.771 kb on - strand, within PP_1398at 1592.939 kb on + strand, within PP_1398at 1592.940 kb on - strand, within PP_1398at 1593.127 kb on + strand, within PP_1398at 1593.128 kb on - strand, within PP_1398at 1593.128 kb on - strand, within PP_1398at 1593.128 kb on - strand, within PP_1398at 1593.151 kb on + strand, within PP_1398at 1593.151 kb on + strand, within PP_1398at 1593.151 kb on + strand, within PP_1398at 1593.268 kb on + strandat 1593.269 kb on - strandat 1593.269 kb on - strandat 1593.271 kb on + strandat 1593.271 kb on + strandat 1593.272 kb on - strandat 1593.272 kb on - strandat 1593.274 kb on + strandat 1593.274 kb on + strandat 1593.274 kb on + strandat 1593.274 kb on + strandat 1593.274 kb on + strandat 1593.275 kb on - strandat 1593.275 kb on - strandat 1593.275 kb on - strandat 1593.275 kb on - strandat 1593.275 kb on - strandat 1593.275 kb on - strandat 1593.275 kb on - strandat 1593.300 kb on + strandat 1593.300 kb on + strandat 1593.324 kb on - strandat 1593.324 kb on - strandat 1593.324 kb on - strandat 1593.396 kb on + strandat 1593.397 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 30C
remove
1,591,478 + PP_1395 0.55 -3.3
1,591,479 - PP_1395 0.55 -0.2
1,591,479 - PP_1395 0.55 -0.6
1,591,646 + PP_1395 0.73 +0.0
1,591,646 + PP_1395 0.73 +0.0
1,591,646 + PP_1395 0.73 +0.2
1,591,646 + PP_1395 0.73 +1.3
1,591,646 + PP_1395 0.73 -0.7
1,591,646 + PP_1395 0.73 -2.3
1,591,646 + PP_1395 0.73 +0.6
1,591,646 + PP_1395 0.73 +0.5
1,591,647 - PP_1395 0.73 +1.3
1,591,647 - PP_1395 0.73 -1.0
1,591,647 - PP_1395 0.73 +0.5
1,591,647 - PP_1395 0.73 +0.3
1,591,647 - PP_1395 0.73 +0.6
1,591,647 - PP_1395 0.73 +0.4
1,591,647 - PP_1395 0.73 +1.2
1,591,647 - PP_1395 0.73 -0.0
1,591,647 - PP_1395 0.73 +1.4
1,591,647 - PP_1395 0.73 -1.3
1,591,647 - PP_1395 0.73 +1.0
1,591,667 + PP_1395 0.75 -1.3
1,591,667 + PP_1395 0.75 +0.0
1,591,667 + PP_1395 0.75 -1.0
1,591,668 - PP_1395 0.75 +0.9
1,591,741 + PP_1395 0.83 -2.4
1,591,750 + PP_1395 0.84 +0.9
1,591,763 + PP_1395 0.86 -0.3
1,591,764 - PP_1395 0.86 +1.4
1,591,775 + PP_1395 0.87 +1.4
1,591,775 + PP_1395 0.87 +0.1
1,591,776 - PP_1395 0.87 +0.2
1,591,924 + -1.7
1,591,924 + +0.7
1,591,924 + +1.4
1,591,925 - -0.8
1,591,925 - +0.7
1,591,925 - +0.1
1,591,925 - +0.7
1,591,925 - +0.3
1,592,013 + -0.6
1,592,013 + +1.3
1,592,014 - +0.1
1,592,104 + +0.5
1,592,204 - PP_1396 0.37 -0.5
1,592,204 - PP_1396 0.37 -1.5
1,592,303 + PP_1396 0.70 -0.4
1,592,303 + PP_1396 0.70 +0.2
1,592,303 + PP_1396 0.70 -0.8
1,592,303 + PP_1396 0.70 -0.5
1,592,304 - PP_1396 0.71 -0.7
1,592,377 + +0.5
1,592,377 + -0.6
1,592,377 + +2.3
1,592,377 + +0.7
1,592,378 - -1.1
1,592,402 + -0.8
1,592,403 - -0.9
1,592,403 - +1.1
1,592,447 + PP_1397 0.15 +0.1
1,592,448 - PP_1397 0.16 +0.5
1,592,448 - PP_1397 0.16 +1.6
1,592,448 - PP_1397 0.16 -0.2
1,592,720 - +0.8
1,592,770 + PP_1398 0.16 -1.0
1,592,770 + PP_1398 0.16 +2.5
1,592,770 + PP_1398 0.16 -1.0
1,592,771 - PP_1398 0.16 -0.9
1,592,771 - PP_1398 0.16 +1.6
1,592,939 + PP_1398 0.44 +0.8
1,592,940 - PP_1398 0.44 +0.4
1,593,127 + PP_1398 0.75 -0.8
1,593,128 - PP_1398 0.75 -0.1
1,593,128 - PP_1398 0.75 -0.5
1,593,128 - PP_1398 0.75 -1.2
1,593,151 + PP_1398 0.79 +0.3
1,593,151 + PP_1398 0.79 +0.3
1,593,151 + PP_1398 0.79 +0.6
1,593,268 + +0.8
1,593,269 - -0.4
1,593,269 - -1.9
1,593,271 + +0.0
1,593,271 + +0.5
1,593,272 - -0.5
1,593,272 - +0.2
1,593,274 + -1.5
1,593,274 + -0.3
1,593,274 + -0.0
1,593,274 + -0.4
1,593,274 + +1.1
1,593,275 - -1.9
1,593,275 - +1.3
1,593,275 - -0.3
1,593,275 - +0.8
1,593,275 - +0.2
1,593,275 - +0.3
1,593,275 - +0.8
1,593,300 + +0.7
1,593,300 + +0.2
1,593,324 - +0.8
1,593,324 - +0.8
1,593,324 - +0.9
1,593,396 + -0.2
1,593,397 - +0.1

Or see this region's nucleotide sequence