Experiment: Growth at 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_1000 and PP_1001 are separated by 69 nucleotides PP_1001 and PP_1002 are separated by 33 nucleotides
PP_1000: PP_1000 - ornithine carbamoyltransferase, catabolic, at 1,138,634 to 1,139,644
_1000
PP_1001: PP_1001 - arginine deiminase, at 1,139,714 to 1,140,967
_1001
PP_1002: PP_1002 - arginine/ornithine antiporter, at 1,141,001 to 1,142,428
_1002
Position (kb) 1139
1140
1141 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1138.884 kb on + strand, within PP_1000 at 1139.163 kb on + strand, within PP_1000 at 1139.163 kb on + strand, within PP_1000 at 1139.170 kb on - strand, within PP_1000 at 1139.170 kb on - strand, within PP_1000 at 1139.170 kb on - strand, within PP_1000 at 1139.244 kb on + strand, within PP_1000 at 1139.326 kb on - strand, within PP_1000 at 1139.340 kb on + strand, within PP_1000 at 1139.340 kb on + strand, within PP_1000 at 1139.340 kb on + strand, within PP_1000 at 1139.341 kb on - strand, within PP_1000 at 1139.341 kb on - strand, within PP_1000 at 1139.415 kb on + strand, within PP_1000 at 1139.416 kb on - strand, within PP_1000 at 1139.416 kb on - strand, within PP_1000 at 1139.439 kb on + strand, within PP_1000 at 1139.439 kb on + strand, within PP_1000 at 1139.440 kb on - strand, within PP_1000 at 1139.538 kb on + strand, within PP_1000 at 1139.538 kb on + strand, within PP_1000 at 1139.578 kb on - strand at 1139.706 kb on - strand at 1139.715 kb on + strand at 1139.716 kb on - strand at 1139.718 kb on + strand at 1139.719 kb on - strand at 1139.841 kb on + strand, within PP_1001 at 1139.842 kb on - strand, within PP_1001 at 1139.842 kb on - strand, within PP_1001 at 1140.015 kb on - strand, within PP_1001 at 1140.027 kb on + strand, within PP_1001 at 1140.251 kb on - strand, within PP_1001 at 1140.381 kb on + strand, within PP_1001 at 1140.426 kb on + strand, within PP_1001 at 1140.427 kb on - strand, within PP_1001 at 1140.537 kb on + strand, within PP_1001 at 1140.537 kb on + strand, within PP_1001 at 1140.644 kb on - strand, within PP_1001 at 1140.644 kb on - strand, within PP_1001 at 1140.945 kb on + strand at 1140.946 kb on - strand at 1140.946 kb on - strand at 1141.023 kb on + strand at 1141.032 kb on + strand at 1141.033 kb on - strand at 1141.033 kb on - strand at 1141.174 kb on - strand, within PP_1002 at 1141.192 kb on - strand, within PP_1002 at 1141.192 kb on - strand, within PP_1002 at 1141.210 kb on - strand, within PP_1002 at 1141.210 kb on - strand, within PP_1002 at 1141.269 kb on + strand, within PP_1002 at 1141.270 kb on - strand, within PP_1002 at 1141.303 kb on - strand, within PP_1002 at 1141.320 kb on + strand, within PP_1002 at 1141.351 kb on - strand, within PP_1002 at 1141.365 kb on + strand, within PP_1002 at 1141.365 kb on + strand, within PP_1002 at 1141.366 kb on - strand, within PP_1002 at 1141.366 kb on - strand, within PP_1002 at 1141.366 kb on - strand, within PP_1002 at 1141.877 kb on - strand, within PP_1002
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at 30C remove 1,138,884 + PP_1000 0.25 +2.6 1,139,163 + PP_1000 0.52 -2.3 1,139,163 + PP_1000 0.52 -1.7 1,139,170 - PP_1000 0.53 -1.4 1,139,170 - PP_1000 0.53 -1.1 1,139,170 - PP_1000 0.53 +3.0 1,139,244 + PP_1000 0.60 -0.3 1,139,326 - PP_1000 0.68 +0.7 1,139,340 + PP_1000 0.70 -0.9 1,139,340 + PP_1000 0.70 -2.5 1,139,340 + PP_1000 0.70 -0.6 1,139,341 - PP_1000 0.70 -2.8 1,139,341 - PP_1000 0.70 -1.7 1,139,415 + PP_1000 0.77 -0.9 1,139,416 - PP_1000 0.77 -1.1 1,139,416 - PP_1000 0.77 -2.0 1,139,439 + PP_1000 0.80 -0.1 1,139,439 + PP_1000 0.80 +1.0 1,139,440 - PP_1000 0.80 +0.4 1,139,538 + PP_1000 0.89 +3.0 1,139,538 + PP_1000 0.89 -2.6 1,139,578 - +0.4 1,139,706 - -1.4 1,139,715 + +1.4 1,139,716 - -1.9 1,139,718 + -2.0 1,139,719 - -1.1 1,139,841 + PP_1001 0.10 -0.9 1,139,842 - PP_1001 0.10 -0.6 1,139,842 - PP_1001 0.10 +2.0 1,140,015 - PP_1001 0.24 -2.1 1,140,027 + PP_1001 0.25 +0.6 1,140,251 - PP_1001 0.43 +1.3 1,140,381 + PP_1001 0.53 +1.3 1,140,426 + PP_1001 0.57 +1.4 1,140,427 - PP_1001 0.57 -0.1 1,140,537 + PP_1001 0.66 +0.9 1,140,537 + PP_1001 0.66 +1.4 1,140,644 - PP_1001 0.74 -0.9 1,140,644 - PP_1001 0.74 -1.9 1,140,945 + +1.1 1,140,946 - -2.4 1,140,946 - -1.7 1,141,023 + -0.9 1,141,032 + -1.4 1,141,033 - +1.8 1,141,033 - +0.0 1,141,174 - PP_1002 0.12 +0.4 1,141,192 - PP_1002 0.13 +1.9 1,141,192 - PP_1002 0.13 -1.6 1,141,210 - PP_1002 0.15 -2.0 1,141,210 - PP_1002 0.15 -2.6 1,141,269 + PP_1002 0.19 +4.4 1,141,270 - PP_1002 0.19 -2.3 1,141,303 - PP_1002 0.21 +1.2 1,141,320 + PP_1002 0.22 -1.6 1,141,351 - PP_1002 0.25 +0.7 1,141,365 + PP_1002 0.25 -1.1 1,141,365 + PP_1002 0.25 +1.4 1,141,366 - PP_1002 0.26 -0.1 1,141,366 - PP_1002 0.26 +2.3 1,141,366 - PP_1002 0.26 +3.6 1,141,877 - PP_1002 0.61 -2.1
Or see this region's nucleotide sequence