Experiment: Growth at 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0633 and PP_0634 are separated by 216 nucleotides PP_0634 and PP_t12 are separated by 71 nucleotides PP_t12 and PP_0635 are separated by 499 nucleotides
PP_0633: PP_0633 - Type 4 fimbrial assembly protein PilC, at 739,418 to 740,626
_0633
PP_0634: PP_0634 - Fimbrial protein, at 740,843 to 741,253
_0634
PP_t12: PP_t12 - tRNA-Thr, at 741,325 to 741,400
_t12
PP_0635: PP_0635 - Group II intron-encoding maturase, at 741,900 to 743,321
_0635
Position (kb) 740
741
742 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 739.908 kb on + strand, within PP_0633 at 740.119 kb on - strand at 740.225 kb on + strand, within PP_0633 at 740.239 kb on - strand, within PP_0633 at 740.239 kb on - strand, within PP_0633 at 740.239 kb on - strand, within PP_0633 at 740.239 kb on - strand, within PP_0633 at 740.536 kb on - strand at 740.536 kb on - strand at 740.604 kb on + strand at 740.604 kb on + strand at 740.604 kb on + strand at 740.710 kb on + strand at 740.711 kb on - strand at 740.715 kb on + strand at 740.715 kb on + strand at 740.716 kb on - strand at 740.716 kb on - strand at 740.716 kb on - strand at 740.836 kb on + strand at 740.836 kb on + strand at 740.836 kb on + strand at 740.836 kb on + strand at 740.836 kb on + strand at 740.836 kb on + strand at 740.837 kb on - strand at 740.837 kb on - strand at 740.837 kb on - strand at 740.861 kb on - strand at 740.930 kb on + strand, within PP_0634 at 740.930 kb on + strand, within PP_0634 at 740.930 kb on + strand, within PP_0634 at 740.931 kb on - strand, within PP_0634 at 741.030 kb on + strand, within PP_0634 at 741.030 kb on + strand, within PP_0634 at 741.030 kb on + strand, within PP_0634 at 741.031 kb on - strand, within PP_0634 at 741.031 kb on - strand, within PP_0634 at 741.040 kb on - strand, within PP_0634 at 741.040 kb on - strand, within PP_0634 at 741.266 kb on - strand at 741.266 kb on - strand at 741.266 kb on - strand at 741.310 kb on + strand at 741.311 kb on - strand at 741.311 kb on - strand at 741.311 kb on - strand at 741.332 kb on + strand at 741.360 kb on + strand, within PP_t12 at 741.415 kb on - strand at 741.443 kb on + strand at 741.443 kb on + strand at 741.443 kb on + strand at 741.443 kb on + strand at 741.443 kb on + strand at 741.444 kb on - strand at 741.444 kb on - strand at 741.444 kb on - strand at 741.444 kb on - strand at 741.500 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at 30C remove 739,908 + PP_0633 0.41 -2.3 740,119 - +3.6 740,225 + PP_0633 0.67 -0.7 740,239 - PP_0633 0.68 -0.2 740,239 - PP_0633 0.68 +0.8 740,239 - PP_0633 0.68 +0.8 740,239 - PP_0633 0.68 +0.4 740,536 - -0.1 740,536 - -4.8 740,604 + -4.7 740,604 + -0.1 740,604 + -0.2 740,710 + -3.8 740,711 - -1.2 740,715 + +1.0 740,715 + -0.4 740,716 - -2.8 740,716 - +0.9 740,716 - -3.7 740,836 + +0.6 740,836 + +1.4 740,836 + -0.4 740,836 + +0.4 740,836 + -1.4 740,836 + +0.7 740,837 - -1.9 740,837 - +1.5 740,837 - -2.3 740,861 - -0.3 740,930 + PP_0634 0.21 +0.9 740,930 + PP_0634 0.21 +1.2 740,930 + PP_0634 0.21 +0.8 740,931 - PP_0634 0.21 +1.1 741,030 + PP_0634 0.45 +0.9 741,030 + PP_0634 0.45 +0.8 741,030 + PP_0634 0.45 -0.8 741,031 - PP_0634 0.46 +0.5 741,031 - PP_0634 0.46 +0.1 741,040 - PP_0634 0.48 -0.3 741,040 - PP_0634 0.48 +0.4 741,266 - +0.5 741,266 - +1.2 741,266 - +0.5 741,310 + -2.1 741,311 - -0.2 741,311 - -1.6 741,311 - -1.1 741,332 + -0.5 741,360 + PP_t12 0.46 +0.5 741,415 - -0.7 741,443 + +0.5 741,443 + -0.2 741,443 + +0.5 741,443 + +1.0 741,443 + -1.9 741,444 - -0.5 741,444 - +0.1 741,444 - +1.3 741,444 - +0.7 741,500 - +1.1
Or see this region's nucleotide sequence