Strain Fitness in Pseudomonas putida KT2440 around PP_0541

Experiment: Growth at 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0539 and PP_0540 are separated by 20 nucleotidesPP_0540 and PP_0541 are separated by 217 nucleotidesPP_0541 and PP_0542 are separated by 107 nucleotidesPP_0542 and PP_0543 are separated by 8 nucleotides PP_0539: PP_0539 - glucose-regulated peptidase, at 625,709 to 626,524 _0539 PP_0540: PP_0540 - conserved inner membrane protein, at 626,545 to 627,192 _0540 PP_0541: PP_0541 - Acetyltransferase, GNAT family, at 627,410 to 627,868 _0541 PP_0542: PP_0542 - ethanolamine ammonia-lyase, beta-subunit, at 627,976 to 628,794 _0542 PP_0543: PP_0543 - ethanolamine ammonia-lyase, alpha-subunit, at 628,803 to 630,197 _0543 Position (kb) 627 628Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 626.491 kb on + strandat 626.492 kb on - strandat 626.492 kb on - strandat 626.539 kb on - strandat 626.843 kb on + strand, within PP_0540at 626.843 kb on + strand, within PP_0540at 626.856 kb on + strand, within PP_0540at 626.868 kb on - strand, within PP_0540at 626.936 kb on + strand, within PP_0540at 626.936 kb on + strand, within PP_0540at 627.067 kb on + strand, within PP_0540at 627.068 kb on - strand, within PP_0540at 627.068 kb on - strand, within PP_0540at 627.111 kb on - strand, within PP_0540at 627.111 kb on - strand, within PP_0540at 627.125 kb on + strand, within PP_0540at 627.125 kb on + strand, within PP_0540at 627.126 kb on - strand, within PP_0540at 627.126 kb on - strand, within PP_0540at 627.126 kb on - strand, within PP_0540at 627.126 kb on - strand, within PP_0540at 627.126 kb on - strand, within PP_0540at 627.126 kb on - strand, within PP_0540at 627.126 kb on - strand, within PP_0540at 627.149 kb on + strandat 627.194 kb on + strandat 627.194 kb on + strandat 627.194 kb on + strandat 627.194 kb on + strandat 627.195 kb on - strandat 627.195 kb on - strandat 627.195 kb on - strandat 627.195 kb on - strandat 627.195 kb on - strandat 627.218 kb on - strandat 627.218 kb on - strandat 627.271 kb on - strandat 627.272 kb on + strandat 627.273 kb on - strandat 627.273 kb on - strandat 627.273 kb on - strandat 627.273 kb on - strandat 627.273 kb on - strandat 627.273 kb on - strandat 627.278 kb on + strandat 627.307 kb on - strandat 627.317 kb on + strandat 627.318 kb on - strandat 627.322 kb on + strandat 627.323 kb on - strandat 627.323 kb on - strandat 627.323 kb on - strandat 627.331 kb on - strandat 627.380 kb on + strandat 627.380 kb on + strandat 627.380 kb on + strandat 627.381 kb on - strandat 627.381 kb on - strandat 627.381 kb on - strandat 627.381 kb on - strandat 627.436 kb on - strandat 627.436 kb on - strandat 627.436 kb on - strandat 627.609 kb on - strand, within PP_0541at 627.612 kb on + strand, within PP_0541at 627.612 kb on + strand, within PP_0541at 627.612 kb on + strand, within PP_0541at 627.612 kb on + strand, within PP_0541at 627.612 kb on + strand, within PP_0541at 627.612 kb on + strand, within PP_0541at 627.612 kb on + strand, within PP_0541at 627.612 kb on + strand, within PP_0541at 627.612 kb on + strand, within PP_0541at 627.613 kb on - strand, within PP_0541at 627.613 kb on - strand, within PP_0541at 627.613 kb on - strand, within PP_0541at 627.613 kb on - strand, within PP_0541at 627.613 kb on - strand, within PP_0541at 627.613 kb on - strand, within PP_0541at 627.613 kb on - strand, within PP_0541at 627.613 kb on - strand, within PP_0541at 627.613 kb on - strand, within PP_0541at 627.616 kb on + strand, within PP_0541at 627.617 kb on - strand, within PP_0541at 627.617 kb on - strand, within PP_0541at 627.617 kb on - strand, within PP_0541at 627.657 kb on + strand, within PP_0541at 627.658 kb on - strand, within PP_0541at 627.658 kb on - strand, within PP_0541at 627.658 kb on - strand, within PP_0541at 627.720 kb on + strand, within PP_0541at 627.720 kb on + strand, within PP_0541at 627.721 kb on - strand, within PP_0541at 627.721 kb on - strand, within PP_0541at 627.721 kb on - strand, within PP_0541at 627.780 kb on + strand, within PP_0541at 627.807 kb on + strand, within PP_0541at 627.807 kb on + strand, within PP_0541at 627.943 kb on + strandat 627.944 kb on - strandat 628.035 kb on + strandat 628.057 kb on + strandat 628.058 kb on - strand, within PP_0542at 628.103 kb on + strand, within PP_0542at 628.103 kb on + strand, within PP_0542at 628.104 kb on - strand, within PP_0542at 628.104 kb on - strand, within PP_0542at 628.130 kb on + strand, within PP_0542at 628.202 kb on + strand, within PP_0542at 628.211 kb on + strand, within PP_0542at 628.211 kb on + strand, within PP_0542at 628.211 kb on + strand, within PP_0542at 628.212 kb on - strand, within PP_0542at 628.545 kb on - strand, within PP_0542at 628.545 kb on - strand, within PP_0542at 628.777 kb on - strandat 628.804 kb on + strandat 628.804 kb on + strandat 628.805 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 30C
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626,491 + -0.3
626,492 - -1.1
626,492 - +0.5
626,539 - +0.4
626,843 + PP_0540 0.46 +0.1
626,843 + PP_0540 0.46 -0.4
626,856 + PP_0540 0.48 -0.9
626,868 - PP_0540 0.50 -1.2
626,936 + PP_0540 0.60 +0.5
626,936 + PP_0540 0.60 -1.7
627,067 + PP_0540 0.81 -0.5
627,068 - PP_0540 0.81 -0.2
627,068 - PP_0540 0.81 -1.9
627,111 - PP_0540 0.87 -2.7
627,111 - PP_0540 0.87 +0.1
627,125 + PP_0540 0.90 -0.8
627,125 + PP_0540 0.90 -3.8
627,126 - PP_0540 0.90 -0.4
627,126 - PP_0540 0.90 -0.1
627,126 - PP_0540 0.90 +0.7
627,126 - PP_0540 0.90 -0.4
627,126 - PP_0540 0.90 +0.2
627,126 - PP_0540 0.90 +0.9
627,126 - PP_0540 0.90 -2.0
627,149 + +0.7
627,194 + -0.1
627,194 + -0.0
627,194 + -0.1
627,194 + +0.3
627,195 - -1.1
627,195 - +1.5
627,195 - -1.5
627,195 - +0.7
627,195 - +0.5
627,218 - +0.1
627,218 - +0.6
627,271 - +0.2
627,272 + -2.3
627,273 - +0.8
627,273 - +0.4
627,273 - -2.7
627,273 - +0.2
627,273 - -0.8
627,273 - -0.9
627,278 + -0.1
627,307 - -2.2
627,317 + +0.9
627,318 - +0.7
627,322 + +0.0
627,323 - -0.6
627,323 - -0.2
627,323 - +0.1
627,331 - +0.1
627,380 + +0.6
627,380 + +0.6
627,380 + +0.1
627,381 - -0.7
627,381 - -0.3
627,381 - +1.7
627,381 - -0.3
627,436 - +0.3
627,436 - -0.0
627,436 - -0.7
627,609 - PP_0541 0.43 -1.3
627,612 + PP_0541 0.44 +0.7
627,612 + PP_0541 0.44 -0.7
627,612 + PP_0541 0.44 -0.2
627,612 + PP_0541 0.44 +0.8
627,612 + PP_0541 0.44 -1.2
627,612 + PP_0541 0.44 +0.0
627,612 + PP_0541 0.44 -1.3
627,612 + PP_0541 0.44 -0.4
627,612 + PP_0541 0.44 -3.1
627,613 - PP_0541 0.44 -0.1
627,613 - PP_0541 0.44 -0.2
627,613 - PP_0541 0.44 +2.5
627,613 - PP_0541 0.44 -4.1
627,613 - PP_0541 0.44 +0.4
627,613 - PP_0541 0.44 -0.7
627,613 - PP_0541 0.44 +1.6
627,613 - PP_0541 0.44 -0.0
627,613 - PP_0541 0.44 -4.6
627,616 + PP_0541 0.45 -0.2
627,617 - PP_0541 0.45 -1.7
627,617 - PP_0541 0.45 -1.0
627,617 - PP_0541 0.45 -1.5
627,657 + PP_0541 0.54 -0.1
627,658 - PP_0541 0.54 -1.0
627,658 - PP_0541 0.54 -1.4
627,658 - PP_0541 0.54 -1.0
627,720 + PP_0541 0.68 -1.5
627,720 + PP_0541 0.68 -3.1
627,721 - PP_0541 0.68 +0.1
627,721 - PP_0541 0.68 -0.6
627,721 - PP_0541 0.68 -3.5
627,780 + PP_0541 0.81 -0.6
627,807 + PP_0541 0.86 +0.1
627,807 + PP_0541 0.86 -0.8
627,943 + -0.6
627,944 - -1.0
628,035 + +0.3
628,057 + -0.2
628,058 - PP_0542 0.10 +0.7
628,103 + PP_0542 0.16 -0.3
628,103 + PP_0542 0.16 +0.8
628,104 - PP_0542 0.16 -1.3
628,104 - PP_0542 0.16 +0.1
628,130 + PP_0542 0.19 -0.9
628,202 + PP_0542 0.28 +0.7
628,211 + PP_0542 0.29 +1.4
628,211 + PP_0542 0.29 +0.2
628,211 + PP_0542 0.29 +0.5
628,212 - PP_0542 0.29 +0.8
628,545 - PP_0542 0.69 -0.9
628,545 - PP_0542 0.69 -0.1
628,777 - +0.4
628,804 + +0.8
628,804 + +0.5
628,805 - -1.2

Or see this region's nucleotide sequence