Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21080 and PS417_21085 overlap by 1 nucleotides PS417_21085 and PS417_21090 are separated by 272 nucleotides PS417_21090 and PS417_21095 are separated by 5 nucleotides
PS417_21080: PS417_21080 - 2-methylisocitrate lyase, at 4,588,596 to 4,589,489
_21080
PS417_21085: PS417_21085 - GntR family transcriptional regulator, at 4,589,489 to 4,590,199
_21085
PS417_21090: PS417_21090 - hypothetical protein, at 4,590,472 to 4,591,008
_21090
PS417_21095: PS417_21095 - membrane protein, at 4,591,014 to 4,592,546
_21095
Position (kb)
4590
4591
4592 Strain fitness (log2 ratio)
-1
0
1 at 4589.729 kb on - strand, within PS417_21085 at 4589.729 kb on - strand, within PS417_21085 at 4589.729 kb on - strand, within PS417_21085 at 4589.788 kb on - strand, within PS417_21085 at 4589.926 kb on - strand, within PS417_21085 at 4590.052 kb on - strand, within PS417_21085 at 4590.358 kb on + strand at 4590.422 kb on + strand at 4590.423 kb on - strand at 4590.471 kb on + strand at 4590.471 kb on + strand at 4590.494 kb on + strand at 4590.551 kb on - strand, within PS417_21090 at 4590.566 kb on - strand, within PS417_21090 at 4590.800 kb on - strand, within PS417_21090 at 4591.071 kb on - strand at 4591.071 kb on - strand at 4591.264 kb on - strand, within PS417_21095 at 4591.344 kb on + strand, within PS417_21095 at 4591.345 kb on - strand, within PS417_21095 at 4591.345 kb on - strand, within PS417_21095 at 4591.345 kb on - strand, within PS417_21095 at 4591.345 kb on - strand at 4591.347 kb on + strand, within PS417_21095 at 4591.722 kb on + strand, within PS417_21095 at 4591.923 kb on + strand, within PS417_21095 at 4591.961 kb on + strand, within PS417_21095 at 4591.961 kb on + strand, within PS417_21095 at 4591.961 kb on + strand, within PS417_21095
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 4,589,729 - PS417_21085 0.34 -0.2 4,589,729 - PS417_21085 0.34 +0.6 4,589,729 - PS417_21085 0.34 -0.7 4,589,788 - PS417_21085 0.42 +0.4 4,589,926 - PS417_21085 0.61 -0.4 4,590,052 - PS417_21085 0.79 -1.2 4,590,358 + -0.9 4,590,422 + -0.9 4,590,423 - +1.2 4,590,471 + -1.5 4,590,471 + +1.0 4,590,494 + +0.1 4,590,551 - PS417_21090 0.15 +1.3 4,590,566 - PS417_21090 0.18 +0.6 4,590,800 - PS417_21090 0.61 +1.1 4,591,071 - +0.7 4,591,071 - +0.3 4,591,264 - PS417_21095 0.16 +1.1 4,591,344 + PS417_21095 0.22 -0.4 4,591,345 - PS417_21095 0.22 -1.5 4,591,345 - PS417_21095 0.22 -0.1 4,591,345 - PS417_21095 0.22 +0.4 4,591,345 - -1.6 4,591,347 + PS417_21095 0.22 +0.2 4,591,722 + PS417_21095 0.46 +0.2 4,591,923 + PS417_21095 0.59 -0.7 4,591,961 + PS417_21095 0.62 +0.2 4,591,961 + PS417_21095 0.62 +0.2 4,591,961 + PS417_21095 0.62 +0.6
Or see this region's nucleotide sequence