Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_09065 and PS417_09070 are separated by 203 nucleotides PS417_09070 and PS417_09075 are separated by 114 nucleotides
PS417_09065: PS417_09065 - short-chain dehydrogenase, at 1,973,123 to 1,973,884
_09065
PS417_09070: PS417_09070 - GntR family transcriptional regulator, at 1,974,088 to 1,975,500
_09070
PS417_09075: PS417_09075 - chemotaxis protein, at 1,975,615 to 1,977,582
_09075
Position (kb) 1974
1975
1976 Strain fitness (log2 ratio) -2
-1
0
1 at 1973.122 kb on + strand at 1973.123 kb on - strand at 1973.123 kb on - strand at 1973.123 kb on - strand at 1973.366 kb on + strand at 1973.367 kb on - strand, within PS417_09065 at 1973.587 kb on + strand, within PS417_09065 at 1973.587 kb on + strand, within PS417_09065 at 1973.587 kb on + strand, within PS417_09065 at 1973.587 kb on + strand, within PS417_09065 at 1973.588 kb on - strand, within PS417_09065 at 1973.701 kb on + strand, within PS417_09065 at 1973.701 kb on + strand at 1973.882 kb on + strand at 1973.882 kb on + strand at 1974.119 kb on + strand at 1974.222 kb on + strand at 1974.461 kb on - strand, within PS417_09070 at 1974.461 kb on - strand, within PS417_09070 at 1974.508 kb on + strand, within PS417_09070 at 1974.508 kb on + strand, within PS417_09070 at 1974.509 kb on - strand, within PS417_09070 at 1974.994 kb on + strand, within PS417_09070 at 1974.994 kb on + strand, within PS417_09070 at 1974.995 kb on - strand, within PS417_09070 at 1975.037 kb on + strand, within PS417_09070 at 1975.043 kb on - strand, within PS417_09070 at 1975.159 kb on + strand, within PS417_09070 at 1975.212 kb on + strand, within PS417_09070 at 1975.213 kb on - strand, within PS417_09070 at 1975.269 kb on + strand, within PS417_09070 at 1975.269 kb on + strand, within PS417_09070 at 1975.296 kb on - strand, within PS417_09070 at 1975.498 kb on + strand at 1975.689 kb on - strand at 1975.794 kb on - strand at 1975.944 kb on - strand, within PS417_09075 at 1975.944 kb on - strand, within PS417_09075 at 1976.207 kb on + strand, within PS417_09075 at 1976.208 kb on - strand, within PS417_09075 at 1976.208 kb on - strand, within PS417_09075 at 1976.208 kb on - strand, within PS417_09075 at 1976.208 kb on - strand at 1976.208 kb on - strand, within PS417_09075 at 1976.208 kb on - strand, within PS417_09075 at 1976.390 kb on - strand, within PS417_09075 at 1976.399 kb on + strand, within PS417_09075 at 1976.476 kb on + strand, within PS417_09075
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 1,973,122 + +0.4 1,973,123 - -0.4 1,973,123 - +0.3 1,973,123 - -0.9 1,973,366 + +0.5 1,973,367 - PS417_09065 0.32 -0.2 1,973,587 + PS417_09065 0.61 +0.1 1,973,587 + PS417_09065 0.61 -1.8 1,973,587 + PS417_09065 0.61 -0.5 1,973,587 + PS417_09065 0.61 -0.3 1,973,588 - PS417_09065 0.61 -0.6 1,973,701 + PS417_09065 0.76 -0.0 1,973,701 + +0.7 1,973,882 + -0.6 1,973,882 + -0.6 1,974,119 + -0.5 1,974,222 + +0.1 1,974,461 - PS417_09070 0.26 +0.9 1,974,461 - PS417_09070 0.26 +0.7 1,974,508 + PS417_09070 0.30 +1.6 1,974,508 + PS417_09070 0.30 -0.3 1,974,509 - PS417_09070 0.30 +1.0 1,974,994 + PS417_09070 0.64 +1.0 1,974,994 + PS417_09070 0.64 -0.0 1,974,995 - PS417_09070 0.64 -0.5 1,975,037 + PS417_09070 0.67 -0.4 1,975,043 - PS417_09070 0.68 +0.4 1,975,159 + PS417_09070 0.76 -1.2 1,975,212 + PS417_09070 0.80 +0.7 1,975,213 - PS417_09070 0.80 +0.3 1,975,269 + PS417_09070 0.84 -1.2 1,975,269 + PS417_09070 0.84 -0.1 1,975,296 - PS417_09070 0.85 +0.9 1,975,498 + -0.9 1,975,689 - -1.1 1,975,794 - +1.6 1,975,944 - PS417_09075 0.17 -0.5 1,975,944 - PS417_09075 0.17 -0.7 1,976,207 + PS417_09075 0.30 +0.1 1,976,208 - PS417_09075 0.30 +0.2 1,976,208 - PS417_09075 0.30 +0.7 1,976,208 - PS417_09075 0.30 +0.1 1,976,208 - +1.2 1,976,208 - PS417_09075 0.30 -1.7 1,976,208 - PS417_09075 0.30 -1.2 1,976,390 - PS417_09075 0.39 -1.4 1,976,399 + PS417_09075 0.40 -0.8 1,976,476 + PS417_09075 0.44 -1.0
Or see this region's nucleotide sequence