Strain Fitness in Pseudomonas putida KT2440 around PP_0369

Experiment: Temperature shift 10_to_25; with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0368 and PP_0369 are separated by 301 nucleotidesPP_0369 and PP_0370 are separated by 124 nucleotides PP_0368: PP_0368 - putative Acyl-CoA dehydrogenase, at 445,315 to 447,120 _0368 PP_0369: PP_0369 - putative diguanylate cyclase, at 447,422 to 448,705 _0369 PP_0370: PP_0370 - Acyl-CoA dehydrogenase family protein, at 448,830 to 450,608 _0370 Position (kb) 447 448 449Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 446.440 kb on + strand, within PP_0368at 446.441 kb on - strand, within PP_0368at 446.553 kb on - strand, within PP_0368at 446.619 kb on + strand, within PP_0368at 446.619 kb on + strand, within PP_0368at 446.619 kb on + strand, within PP_0368at 446.620 kb on - strand, within PP_0368at 446.620 kb on - strand, within PP_0368at 446.620 kb on - strand, within PP_0368at 446.620 kb on - strand, within PP_0368at 446.620 kb on - strand, within PP_0368at 446.620 kb on - strand, within PP_0368at 446.632 kb on + strand, within PP_0368at 446.633 kb on - strand, within PP_0368at 446.881 kb on + strand, within PP_0368at 446.891 kb on - strand, within PP_0368at 446.891 kb on - strand, within PP_0368at 446.891 kb on - strandat 446.899 kb on + strand, within PP_0368at 446.899 kb on + strand, within PP_0368at 446.915 kb on - strand, within PP_0368at 446.915 kb on - strand, within PP_0368at 446.983 kb on + strandat 446.984 kb on - strandat 447.013 kb on + strandat 447.013 kb on + strandat 447.013 kb on + strandat 447.036 kb on + strandat 447.115 kb on + strandat 447.115 kb on + strandat 447.115 kb on + strandat 447.116 kb on - strandat 447.116 kb on - strandat 447.122 kb on - strandat 447.202 kb on - strandat 447.213 kb on + strandat 447.279 kb on + strandat 447.280 kb on - strandat 447.302 kb on - strandat 447.394 kb on + strandat 447.395 kb on - strandat 447.417 kb on + strandat 447.500 kb on + strandat 447.501 kb on - strandat 447.501 kb on - strandat 447.501 kb on - strandat 447.501 kb on - strandat 447.550 kb on + strandat 447.551 kb on - strand, within PP_0369at 447.579 kb on - strand, within PP_0369at 447.588 kb on + strand, within PP_0369at 447.589 kb on - strand, within PP_0369at 447.590 kb on + strand, within PP_0369at 447.590 kb on + strand, within PP_0369at 447.591 kb on - strandat 447.629 kb on + strand, within PP_0369at 447.629 kb on + strand, within PP_0369at 447.630 kb on - strand, within PP_0369at 447.630 kb on - strand, within PP_0369at 447.630 kb on - strand, within PP_0369at 447.638 kb on + strand, within PP_0369at 447.668 kb on + strand, within PP_0369at 447.669 kb on - strand, within PP_0369at 447.669 kb on - strand, within PP_0369at 447.753 kb on - strand, within PP_0369at 447.753 kb on - strand, within PP_0369at 447.772 kb on + strand, within PP_0369at 447.772 kb on + strand, within PP_0369at 447.773 kb on - strandat 447.773 kb on - strand, within PP_0369at 447.773 kb on - strand, within PP_0369at 447.773 kb on - strand, within PP_0369at 447.773 kb on - strand, within PP_0369at 447.938 kb on + strand, within PP_0369at 447.939 kb on - strand, within PP_0369at 447.980 kb on + strand, within PP_0369at 447.980 kb on + strand, within PP_0369at 447.980 kb on + strand, within PP_0369at 447.981 kb on - strand, within PP_0369at 447.981 kb on - strand, within PP_0369at 448.073 kb on - strand, within PP_0369at 448.136 kb on + strand, within PP_0369at 448.136 kb on + strand, within PP_0369at 448.136 kb on + strand, within PP_0369at 448.216 kb on + strand, within PP_0369at 448.216 kb on + strand, within PP_0369at 448.217 kb on - strand, within PP_0369at 448.217 kb on - strand, within PP_0369at 448.217 kb on - strand, within PP_0369at 448.220 kb on + strand, within PP_0369at 448.220 kb on + strand, within PP_0369at 448.220 kb on + strand, within PP_0369at 448.221 kb on - strand, within PP_0369at 448.221 kb on - strand, within PP_0369at 448.221 kb on - strand, within PP_0369at 448.221 kb on - strand, within PP_0369at 448.349 kb on + strand, within PP_0369at 448.448 kb on + strand, within PP_0369at 448.625 kb on + strandat 448.625 kb on + strandat 448.625 kb on + strandat 448.626 kb on - strandat 448.773 kb on + strandat 448.816 kb on - strandat 448.839 kb on + strandat 448.840 kb on - strandat 448.841 kb on + strandat 449.079 kb on + strand, within PP_0370at 449.145 kb on - strand, within PP_0370at 449.295 kb on + strand, within PP_0370at 449.295 kb on + strand, within PP_0370at 449.295 kb on + strand, within PP_0370at 449.295 kb on + strand, within PP_0370at 449.295 kb on + strand, within PP_0370at 449.295 kb on + strand, within PP_0370at 449.295 kb on + strand, within PP_0370at 449.295 kb on + strand, within PP_0370at 449.296 kb on - strand, within PP_0370at 449.296 kb on - strand, within PP_0370at 449.296 kb on - strand, within PP_0370at 449.296 kb on - strand, within PP_0370at 449.296 kb on - strand, within PP_0370at 449.296 kb on - strand, within PP_0370at 449.296 kb on - strand, within PP_0370at 449.296 kb on - strand, within PP_0370at 449.296 kb on - strand, within PP_0370at 449.397 kb on + strand, within PP_0370at 449.397 kb on + strand, within PP_0370at 449.397 kb on + strand, within PP_0370at 449.398 kb on - strand, within PP_0370at 449.398 kb on - strand, within PP_0370at 449.398 kb on - strand, within PP_0370at 449.398 kb on - strand, within PP_0370at 449.624 kb on + strand, within PP_0370at 449.659 kb on - strand, within PP_0370

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Per-strain Table

Position Strand Gene LocusTag Fraction Temperature shift 10_to_25; with MOPS
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446,440 + PP_0368 0.62 -2.0
446,441 - PP_0368 0.62 -1.2
446,553 - PP_0368 0.69 -2.0
446,619 + PP_0368 0.72 -3.6
446,619 + PP_0368 0.72 -0.8
446,619 + PP_0368 0.72 -0.7
446,620 - PP_0368 0.72 -3.8
446,620 - PP_0368 0.72 -4.3
446,620 - PP_0368 0.72 +0.0
446,620 - PP_0368 0.72 +0.7
446,620 - PP_0368 0.72 -0.2
446,620 - PP_0368 0.72 -3.8
446,632 + PP_0368 0.73 -0.1
446,633 - PP_0368 0.73 +0.3
446,881 + PP_0368 0.87 +0.2
446,891 - PP_0368 0.87 -0.9
446,891 - PP_0368 0.87 -0.6
446,891 - -1.5
446,899 + PP_0368 0.88 -3.5
446,899 + PP_0368 0.88 -1.9
446,915 - PP_0368 0.89 -1.9
446,915 - PP_0368 0.89 +0.1
446,983 + -0.4
446,984 - -1.9
447,013 + -4.3
447,013 + -1.2
447,013 + -0.8
447,036 + -3.5
447,115 + -0.1
447,115 + -0.0
447,115 + -1.7
447,116 - +1.5
447,116 - -0.6
447,122 - -0.1
447,202 - -0.4
447,213 + +1.8
447,279 + -0.7
447,280 - -0.8
447,302 - -2.4
447,394 + -2.3
447,395 - -0.2
447,417 + -3.0
447,500 + +0.9
447,501 - +1.2
447,501 - -0.8
447,501 - -1.3
447,501 - +0.8
447,550 + -2.4
447,551 - PP_0369 0.10 -0.2
447,579 - PP_0369 0.12 +0.1
447,588 + PP_0369 0.13 +1.7
447,589 - PP_0369 0.13 +1.3
447,590 + PP_0369 0.13 +1.7
447,590 + PP_0369 0.13 +1.2
447,591 - +2.4
447,629 + PP_0369 0.16 -0.3
447,629 + PP_0369 0.16 +1.2
447,630 - PP_0369 0.16 +1.0
447,630 - PP_0369 0.16 -1.1
447,630 - PP_0369 0.16 -0.2
447,638 + PP_0369 0.17 +0.2
447,668 + PP_0369 0.19 +0.3
447,669 - PP_0369 0.19 -0.7
447,669 - PP_0369 0.19 +0.8
447,753 - PP_0369 0.26 -0.3
447,753 - PP_0369 0.26 +4.0
447,772 + PP_0369 0.27 +2.0
447,772 + PP_0369 0.27 +1.1
447,773 - +1.8
447,773 - PP_0369 0.27 +1.9
447,773 - PP_0369 0.27 +1.4
447,773 - PP_0369 0.27 -1.5
447,773 - PP_0369 0.27 -0.5
447,938 + PP_0369 0.40 -2.9
447,939 - PP_0369 0.40 +0.3
447,980 + PP_0369 0.43 +0.0
447,980 + PP_0369 0.43 -2.6
447,980 + PP_0369 0.43 +1.1
447,981 - PP_0369 0.44 +0.2
447,981 - PP_0369 0.44 -3.1
448,073 - PP_0369 0.51 +1.4
448,136 + PP_0369 0.56 +0.1
448,136 + PP_0369 0.56 +0.9
448,136 + PP_0369 0.56 +0.5
448,216 + PP_0369 0.62 +1.1
448,216 + PP_0369 0.62 -1.0
448,217 - PP_0369 0.62 +1.5
448,217 - PP_0369 0.62 +0.7
448,217 - PP_0369 0.62 +1.0
448,220 + PP_0369 0.62 -0.0
448,220 + PP_0369 0.62 +2.2
448,220 + PP_0369 0.62 +0.1
448,221 - PP_0369 0.62 -1.6
448,221 - PP_0369 0.62 +1.1
448,221 - PP_0369 0.62 +1.3
448,221 - PP_0369 0.62 +2.1
448,349 + PP_0369 0.72 +0.7
448,448 + PP_0369 0.80 +0.8
448,625 + +0.3
448,625 + +2.1
448,625 + +0.6
448,626 - +0.1
448,773 + +0.7
448,816 - -1.1
448,839 + +1.3
448,840 - -1.6
448,841 + -0.4
449,079 + PP_0370 0.14 -3.0
449,145 - PP_0370 0.18 +0.1
449,295 + PP_0370 0.26 +1.2
449,295 + PP_0370 0.26 +1.1
449,295 + PP_0370 0.26 -0.4
449,295 + PP_0370 0.26 +1.2
449,295 + PP_0370 0.26 +0.3
449,295 + PP_0370 0.26 -1.4
449,295 + PP_0370 0.26 +0.4
449,295 + PP_0370 0.26 -0.9
449,296 - PP_0370 0.26 +0.7
449,296 - PP_0370 0.26 +0.5
449,296 - PP_0370 0.26 -2.0
449,296 - PP_0370 0.26 -4.1
449,296 - PP_0370 0.26 +1.4
449,296 - PP_0370 0.26 +0.9
449,296 - PP_0370 0.26 +1.9
449,296 - PP_0370 0.26 -3.1
449,296 - PP_0370 0.26 -2.0
449,397 + PP_0370 0.32 -2.8
449,397 + PP_0370 0.32 +0.2
449,397 + PP_0370 0.32 +0.9
449,398 - PP_0370 0.32 -0.4
449,398 - PP_0370 0.32 -3.5
449,398 - PP_0370 0.32 +0.8
449,398 - PP_0370 0.32 -3.0
449,624 + PP_0370 0.45 -0.6
449,659 - PP_0370 0.47 -1.2

Or see this region's nucleotide sequence