Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00920 and PS417_00925 are separated by 211 nucleotides PS417_00925 and PS417_00930 are separated by 73 nucleotides PS417_00930 and PS417_00935 are separated by 158 nucleotides PS417_00935 and PS417_00940 are separated by 13 nucleotides
PS417_00920: PS417_00920 - diguanylate cyclase, at 206,023 to 207,936
_00920
PS417_00925: PS417_00925 - hypothetical protein, at 208,148 to 208,330
_00925
PS417_00930: PS417_00930 - ABC transporter permease, at 208,404 to 209,414
_00930
PS417_00935: PS417_00935 - sulfate ABC transporter permease, at 209,573 to 210,391
_00935
PS417_00940: PS417_00940 - sulfate ABC transporter permease, at 210,405 to 211,277
_00940
Position (kb) 208
209
210 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 208.081 kb on + strand at 208.081 kb on + strand at 208.081 kb on + strand at 208.081 kb on + strand at 208.081 kb on + strand at 208.081 kb on + strand at 208.081 kb on + strand at 208.082 kb on - strand at 208.082 kb on - strand at 208.127 kb on - strand at 208.135 kb on - strand at 208.135 kb on - strand at 208.135 kb on - strand at 208.162 kb on - strand at 208.162 kb on - strand at 208.165 kb on + strand at 208.258 kb on + strand, within PS417_00925 at 208.272 kb on + strand, within PS417_00925 at 208.329 kb on - strand at 208.353 kb on + strand at 208.354 kb on - strand at 208.365 kb on + strand at 208.366 kb on - strand at 208.366 kb on - strand at 208.366 kb on - strand at 208.367 kb on + strand at 208.367 kb on + strand at 208.403 kb on + strand at 208.403 kb on + strand at 208.404 kb on - strand at 208.404 kb on - strand at 208.404 kb on - strand at 208.404 kb on - strand at 208.479 kb on + strand at 208.530 kb on + strand, within PS417_00930 at 208.530 kb on + strand, within PS417_00930 at 208.796 kb on + strand, within PS417_00930 at 208.797 kb on - strand, within PS417_00930 at 208.947 kb on + strand, within PS417_00930 at 208.948 kb on - strand, within PS417_00930 at 209.096 kb on + strand, within PS417_00930 at 209.202 kb on + strand, within PS417_00930 at 209.202 kb on + strand, within PS417_00930 at 209.203 kb on - strand, within PS417_00930 at 209.218 kb on - strand, within PS417_00930 at 209.218 kb on - strand, within PS417_00930 at 209.256 kb on + strand, within PS417_00930 at 209.490 kb on + strand at 209.491 kb on - strand at 209.572 kb on + strand at 209.572 kb on + strand at 209.573 kb on - strand at 209.624 kb on + strand at 209.636 kb on + strand at 209.652 kb on + strand at 209.679 kb on + strand, within PS417_00935 at 209.925 kb on - strand, within PS417_00935 at 209.981 kb on + strand, within PS417_00935 at 209.983 kb on + strand, within PS417_00935 at 210.203 kb on + strand, within PS417_00935 at 210.287 kb on + strand, within PS417_00935 at 210.288 kb on - strand, within PS417_00935 at 210.288 kb on - strand, within PS417_00935 at 210.288 kb on - strand, within PS417_00935
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 208,081 + -2.9 208,081 + -0.4 208,081 + -0.6 208,081 + -1.1 208,081 + -0.2 208,081 + -0.2 208,081 + +0.9 208,082 - +0.5 208,082 - +0.1 208,127 - +1.5 208,135 - +2.3 208,135 - +0.6 208,135 - -0.1 208,162 - +0.4 208,162 - -0.4 208,165 + +2.3 208,258 + PS417_00925 0.60 -1.2 208,272 + PS417_00925 0.68 -0.5 208,329 - -0.7 208,353 + +0.6 208,354 - +0.2 208,365 + +0.0 208,366 - +0.3 208,366 - +0.5 208,366 - -0.4 208,367 + +0.7 208,367 + -0.8 208,403 + -2.1 208,403 + -0.2 208,404 - -0.1 208,404 - -1.1 208,404 - +0.6 208,404 - -2.4 208,479 + -0.3 208,530 + PS417_00930 0.12 -0.7 208,530 + PS417_00930 0.12 +1.0 208,796 + PS417_00930 0.39 +1.7 208,797 - PS417_00930 0.39 +0.8 208,947 + PS417_00930 0.54 -0.1 208,948 - PS417_00930 0.54 -0.3 209,096 + PS417_00930 0.68 -0.1 209,202 + PS417_00930 0.79 -0.0 209,202 + PS417_00930 0.79 +2.1 209,203 - PS417_00930 0.79 +1.6 209,218 - PS417_00930 0.81 +0.2 209,218 - PS417_00930 0.81 -0.5 209,256 + PS417_00930 0.84 +1.5 209,490 + +0.1 209,491 - -0.5 209,572 + +0.8 209,572 + -1.6 209,573 - -0.6 209,624 + -2.8 209,636 + +0.1 209,652 + -0.0 209,679 + PS417_00935 0.13 +0.1 209,925 - PS417_00935 0.43 -0.6 209,981 + PS417_00935 0.50 -0.1 209,983 + PS417_00935 0.50 +0.8 210,203 + PS417_00935 0.77 +1.1 210,287 + PS417_00935 0.87 +0.3 210,288 - PS417_00935 0.87 +0.3 210,288 - PS417_00935 0.87 +1.0 210,288 - PS417_00935 0.87 -0.2
Or see this region's nucleotide sequence