Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27270 and PS417_27275 are separated by 3 nucleotides PS417_27275 and PS417_27280 overlap by 8 nucleotides
PS417_27270: PS417_27270 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase, at 5,886,714 to 5,887,937
_27270
PS417_27275: PS417_27275 - hypothetical protein, at 5,887,941 to 5,888,426
_27275
PS417_27280: PS417_27280 - 2-octaprenyl-6-methoxyphenyl hydroxylase, at 5,888,419 to 5,889,606
_27280
Position (kb) 5887
5888
5889 Strain fitness (log2 ratio) -1
0
1
2 at 5887.943 kb on - strand at 5887.976 kb on - strand at 5888.048 kb on - strand, within PS417_27275 at 5888.048 kb on - strand, within PS417_27275 at 5888.116 kb on + strand, within PS417_27275 at 5888.117 kb on - strand, within PS417_27275 at 5888.176 kb on + strand, within PS417_27275 at 5888.176 kb on + strand, within PS417_27275 at 5888.177 kb on - strand, within PS417_27275 at 5888.212 kb on + strand, within PS417_27275 at 5888.263 kb on + strand, within PS417_27275 at 5888.263 kb on + strand, within PS417_27275 at 5888.263 kb on + strand, within PS417_27275 at 5888.263 kb on + strand, within PS417_27275 at 5888.264 kb on - strand, within PS417_27275 at 5888.275 kb on + strand, within PS417_27275 at 5888.275 kb on + strand, within PS417_27275 at 5888.353 kb on + strand, within PS417_27275 at 5888.354 kb on - strand, within PS417_27275 at 5888.420 kb on + strand at 5888.421 kb on - strand at 5888.421 kb on - strand at 5888.421 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 5,887,943 - -1.3 5,887,976 - -1.2 5,888,048 - PS417_27275 0.22 -0.5 5,888,048 - PS417_27275 0.22 +0.9 5,888,116 + PS417_27275 0.36 -0.8 5,888,117 - PS417_27275 0.36 -1.1 5,888,176 + PS417_27275 0.48 -0.5 5,888,176 + PS417_27275 0.48 -1.5 5,888,177 - PS417_27275 0.49 -0.2 5,888,212 + PS417_27275 0.56 -1.3 5,888,263 + PS417_27275 0.66 -1.4 5,888,263 + PS417_27275 0.66 -1.5 5,888,263 + PS417_27275 0.66 -0.9 5,888,263 + PS417_27275 0.66 -1.0 5,888,264 - PS417_27275 0.66 -0.2 5,888,275 + PS417_27275 0.69 +0.9 5,888,275 + PS417_27275 0.69 -1.5 5,888,353 + PS417_27275 0.85 -0.5 5,888,354 - PS417_27275 0.85 -1.1 5,888,420 + +0.2 5,888,421 - +0.9 5,888,421 - +0.3 5,888,421 - +2.6
Or see this region's nucleotide sequence