Strain Fitness in Escherichia coli BW25113 around b4523
Experiment: 3-methyl-3-butenol (commercial) 0.5 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 3-methyl-3-butenol (commercial) 0.5 vol% |
---|---|---|---|---|---|
remove | |||||
1,332,440 | - | -1.7 | |||
1,332,922 | + | +1.9 | |||
1,332,930 | - | +0.6 | |||
1,332,930 | - | +0.2 | |||
1,333,156 | + | +0.4 | |||
1,333,158 | - | +1.9 | |||
1,333,160 | - | -0.2 | |||
1,333,197 | + | yciX_1 | b4522 | 0.10 | -0.4 |
1,333,198 | + | yciX_1 | b4522 | 0.11 | -0.1 |
1,333,275 | - | yciX_1 | b4522 | 0.71 | +0.6 |
1,333,286 | - | yciX_1 | b4522 | 0.79 | -1.1 |
1,333,286 | - | yciX_1 | b4522 | 0.79 | -0.7 |
1,333,301 | + | +0.4 | |||
1,333,301 | + | +1.2 | |||
1,333,311 | + | -0.3 | |||
1,333,320 | - | +0.9 | |||
1,333,320 | - | +0.9 | |||
1,333,322 | + | +0.1 | |||
1,333,322 | + | -0.0 | |||
1,333,345 | + | yciX | b4523 | 0.18 | +0.7 |
1,333,345 | + | yciX | b4523 | 0.18 | +0.7 |
1,333,345 | + | yciX | b4523 | 0.18 | +0.6 |
1,333,349 | + | yciX | b4523 | 0.20 | -0.2 |
1,333,418 | + | yciX | b4523 | 0.61 | +1.2 |
1,333,420 | - | yciX | b4523 | 0.62 | +0.9 |
1,333,434 | - | yciX | b4523 | 0.71 | +0.9 |
1,333,450 | - | yciX | b4523 | 0.80 | -0.7 |
1,333,450 | - | yciX | b4523 | 0.80 | +0.9 |
1,333,525 | + | -0.3 | |||
1,333,538 | + | -0.1 | |||
1,333,578 | + | -0.4 | |||
1,333,606 | - | -1.3 | |||
1,333,606 | - | +0.3 | |||
1,333,606 | - | +1.2 | |||
1,333,606 | - | +0.9 | |||
1,333,630 | - | -0.3 | |||
1,333,655 | + | +0.5 | |||
1,333,670 | + | +0.5 | |||
1,333,670 | + | -0.2 | |||
1,333,678 | - | -0.1 | |||
1,333,794 | + | -0.3 | |||
1,333,794 | + | +0.1 | |||
1,333,818 | + | +1.0 | |||
1,333,838 | + | -0.2 | |||
1,333,841 | - | -0.2 | |||
1,333,847 | - | +0.4 | |||
1,333,873 | - | -0.1 | |||
1,333,932 | - | +0.3 | |||
1,334,080 | - | -0.3 | |||
1,334,080 | - | +0.9 |
Or see this region's nucleotide sequence