Strain Fitness in Escherichia coli BW25113 around b1380
Experiment: 3-methyl-3-butenol (commercial) 0.5 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 3-methyl-3-butenol (commercial) 0.5 vol% |
---|---|---|---|---|---|
remove | |||||
1,438,926 | - | -0.7 | |||
1,438,926 | - | +0.5 | |||
1,438,997 | + | +0.1 | |||
1,438,998 | - | -0.9 | |||
1,439,084 | - | -0.2 | |||
1,439,084 | - | +0.3 | |||
1,439,137 | - | ydbJ | b4529 | 0.21 | -0.6 |
1,439,365 | + | +0.4 | |||
1,439,401 | - | hslJ | b1379 | 0.13 | +0.1 |
1,439,561 | - | hslJ | b1379 | 0.51 | -0.1 |
1,439,561 | - | hslJ | b1379 | 0.51 | +0.0 |
1,439,591 | + | hslJ | b1379 | 0.58 | +0.6 |
1,439,591 | + | hslJ | b1379 | 0.58 | -0.3 |
1,439,654 | + | hslJ | b1379 | 0.73 | -1.3 |
1,439,836 | - | +0.4 | |||
1,439,836 | - | +0.1 | |||
1,439,865 | - | +0.4 | |||
1,439,929 | + | -0.2 | |||
1,439,995 | - | ldhA | b1380 | 0.12 | +0.7 |
1,440,256 | + | ldhA | b1380 | 0.38 | -1.2 |
1,440,401 | - | ldhA | b1380 | 0.53 | +0.0 |
1,440,401 | - | ldhA | b1380 | 0.53 | +0.6 |
1,440,872 | - | +0.5 | |||
1,440,994 | + | +1.0 | |||
1,441,169 | + | +0.0 |
Or see this region's nucleotide sequence