Strain Fitness in Pseudomonas simiae WCS417 around PS417_14320

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_14315 and PS417_14320 are separated by 3 nucleotidesPS417_14320 and PS417_14325 are separated by 20 nucleotides PS417_14315: PS417_14315 - 2,5-dioxovalerate dehydrogenase, at 3,133,196 to 3,134,767 _14315 PS417_14320: PS417_14320 - FAD-dependent oxidoreductase, at 3,134,771 to 3,136,009 _14320 PS417_14325: PS417_14325 - AraC family transcriptional regulator, at 3,136,030 to 3,137,037 _14325 Position (kb) 3134 3135 3136 3137Strain fitness (log2 ratio) -3 -2 -1 0 1at 3134.012 kb on + strand, within PS417_14315at 3134.013 kb on - strand, within PS417_14315at 3134.013 kb on - strand, within PS417_14315at 3134.620 kb on + strandat 3134.620 kb on + strandat 3134.620 kb on + strandat 3134.620 kb on + strandat 3134.791 kb on - strandat 3134.898 kb on - strand, within PS417_14320at 3134.898 kb on - strand, within PS417_14320at 3135.077 kb on + strand, within PS417_14320at 3135.171 kb on + strand, within PS417_14320at 3135.172 kb on - strandat 3135.372 kb on - strand, within PS417_14320at 3136.031 kb on + strandat 3136.080 kb on + strandat 3136.081 kb on - strandat 3136.081 kb on - strandat 3136.082 kb on + strandat 3136.083 kb on - strandat 3136.083 kb on - strandat 3136.200 kb on - strandat 3136.200 kb on - strand, within PS417_14325at 3136.467 kb on + strand, within PS417_14325at 3136.845 kb on + strand, within PS417_14325at 3136.989 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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3,134,012 + PS417_14315 0.52 -0.6
3,134,013 - PS417_14315 0.52 -1.5
3,134,013 - PS417_14315 0.52 -0.2
3,134,620 + -1.0
3,134,620 + -0.9
3,134,620 + +0.8
3,134,620 + -0.5
3,134,791 - +1.4
3,134,898 - PS417_14320 0.10 -0.1
3,134,898 - PS417_14320 0.10 -1.1
3,135,077 + PS417_14320 0.25 -0.4
3,135,171 + PS417_14320 0.32 -0.5
3,135,172 - -1.0
3,135,372 - PS417_14320 0.49 +0.0
3,136,031 + -0.9
3,136,080 + -0.3
3,136,081 - +0.4
3,136,081 - +0.2
3,136,082 + +0.3
3,136,083 - -0.7
3,136,083 - -3.7
3,136,200 - +0.2
3,136,200 - PS417_14325 0.17 -0.4
3,136,467 + PS417_14325 0.43 +0.1
3,136,845 + PS417_14325 0.81 -0.5
3,136,989 - -2.8

Or see this region's nucleotide sequence