Strain Fitness in Pseudomonas simiae WCS417 around PS417_09000

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_09000 and PS417_09005 are separated by 10 nucleotidesPS417_09005 and PS417_09010 overlap by 4 nucleotidesPS417_09010 and PS417_09015 are separated by 85 nucleotides PS417_09000: PS417_09000 - glycerol-3-phosphate dehydrogenase, at 1,961,083 to 1,962,108 _09000 PS417_09005: PS417_09005 - lipase, at 1,962,119 to 1,962,466 _09005 PS417_09010: PS417_09010 - phosphohistidine phosphatase, at 1,962,463 to 1,962,912 _09010 PS417_09015: PS417_09015 - AMP-binding protein, at 1,962,998 to 1,964,647 _09015 Position (kb) 1961 1962 1963Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1960.118 kb on + strandat 1960.118 kb on + strandat 1960.118 kb on + strandat 1960.122 kb on + strandat 1960.122 kb on + strandat 1960.122 kb on + strandat 1960.125 kb on - strandat 1960.125 kb on - strandat 1960.610 kb on + strandat 1960.611 kb on - strandat 1960.883 kb on + strandat 1960.883 kb on + strandat 1960.883 kb on + strandat 1960.901 kb on + strandat 1960.901 kb on + strandat 1960.905 kb on + strandat 1960.924 kb on + strandat 1961.041 kb on - strandat 1961.082 kb on + strandat 1961.082 kb on + strandat 1962.146 kb on + strandat 1962.147 kb on - strandat 1962.249 kb on - strand, within PS417_09005at 1962.614 kb on - strand, within PS417_09010at 1962.656 kb on + strand, within PS417_09010at 1962.656 kb on + strand, within PS417_09010at 1962.657 kb on - strand, within PS417_09010at 1962.937 kb on + strandat 1962.937 kb on + strandat 1962.937 kb on + strandat 1962.937 kb on + strandat 1962.937 kb on + strandat 1962.938 kb on - strandat 1962.938 kb on - strandat 1962.938 kb on - strandat 1962.938 kb on - strandat 1962.939 kb on + strandat 1962.939 kb on + strandat 1962.940 kb on - strandat 1962.940 kb on - strandat 1962.940 kb on - strandat 1962.940 kb on - strandat 1963.108 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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1,960,118 + -1.6
1,960,118 + -0.2
1,960,118 + -0.1
1,960,122 + +0.7
1,960,122 + +1.0
1,960,122 + -1.0
1,960,125 - +0.6
1,960,125 - -0.3
1,960,610 + +1.0
1,960,611 - -1.2
1,960,883 + +0.7
1,960,883 + -2.5
1,960,883 + -0.9
1,960,901 + -0.3
1,960,901 + -0.7
1,960,905 + -1.0
1,960,924 + +0.1
1,961,041 - +0.7
1,961,082 + -0.6
1,961,082 + -0.2
1,962,146 + -0.3
1,962,147 - -0.2
1,962,249 - PS417_09005 0.37 -0.5
1,962,614 - PS417_09010 0.34 +0.9
1,962,656 + PS417_09010 0.43 +0.4
1,962,656 + PS417_09010 0.43 +1.5
1,962,657 - PS417_09010 0.43 +1.1
1,962,937 + -1.3
1,962,937 + +1.8
1,962,937 + +0.3
1,962,937 + -2.8
1,962,937 + -0.4
1,962,938 - +0.6
1,962,938 - -2.3
1,962,938 - +0.0
1,962,938 - -0.5
1,962,939 + -1.7
1,962,939 + +3.0
1,962,940 - -3.6
1,962,940 - -0.2
1,962,940 - -1.7
1,962,940 - +0.3
1,963,108 + +0.0

Or see this region's nucleotide sequence