Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_05835 and PS417_05840 are separated by 138 nucleotides PS417_05840 and PS417_05845 are separated by 75 nucleotides PS417_05845 and PS417_05850 are separated by 3 nucleotides
PS417_05835: PS417_05835 - hypothetical protein, at 1,298,206 to 1,298,925
_05835
PS417_05840: PS417_05840 - LuxR family transcriptional regulator, at 1,299,064 to 1,299,714
_05840
PS417_05845: PS417_05845 - diacylglycerol kinase, at 1,299,790 to 1,300,152
_05845
PS417_05850: PS417_05850 - LysR family transcriptional regulator, at 1,300,156 to 1,301,082
_05850
Position (kb)
1299
1300
1301 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1298.818 kb on + strand, within PS417_05835 at 1298.828 kb on + strand, within PS417_05835 at 1298.828 kb on + strand, within PS417_05835 at 1298.828 kb on + strand, within PS417_05835 at 1298.828 kb on + strand, within PS417_05835 at 1298.828 kb on + strand, within PS417_05835 at 1298.829 kb on - strand, within PS417_05835 at 1298.829 kb on - strand, within PS417_05835 at 1298.829 kb on - strand, within PS417_05835 at 1298.843 kb on - strand, within PS417_05835 at 1298.843 kb on - strand, within PS417_05835 at 1298.843 kb on - strand, within PS417_05835 at 1298.908 kb on + strand at 1298.908 kb on + strand at 1298.908 kb on + strand at 1298.908 kb on + strand at 1298.910 kb on + strand at 1298.969 kb on + strand at 1299.058 kb on + strand at 1299.073 kb on + strand at 1299.074 kb on - strand at 1299.155 kb on + strand, within PS417_05840 at 1299.155 kb on + strand, within PS417_05840 at 1299.405 kb on + strand, within PS417_05840 at 1299.406 kb on - strand, within PS417_05840 at 1299.713 kb on - strand at 1299.783 kb on + strand at 1299.784 kb on - strand at 1299.789 kb on + strand at 1299.789 kb on + strand at 1299.790 kb on - strand at 1299.790 kb on - strand at 1299.826 kb on - strand at 1300.150 kb on + strand at 1300.150 kb on + strand at 1300.277 kb on + strand, within PS417_05850 at 1300.277 kb on + strand, within PS417_05850 at 1300.646 kb on - strand, within PS417_05850 at 1300.646 kb on - strand, within PS417_05850
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 1,298,818 + PS417_05835 0.85 +0.0 1,298,828 + PS417_05835 0.86 +0.8 1,298,828 + PS417_05835 0.86 +0.3 1,298,828 + PS417_05835 0.86 -2.1 1,298,828 + PS417_05835 0.86 +0.2 1,298,828 + PS417_05835 0.86 +0.3 1,298,829 - PS417_05835 0.87 +0.4 1,298,829 - PS417_05835 0.87 -1.2 1,298,829 - PS417_05835 0.87 +2.1 1,298,843 - PS417_05835 0.88 -1.5 1,298,843 - PS417_05835 0.88 -0.5 1,298,843 - PS417_05835 0.88 +1.6 1,298,908 + +0.2 1,298,908 + -0.4 1,298,908 + +1.2 1,298,908 + +1.5 1,298,910 + -0.1 1,298,969 + +0.0 1,299,058 + -0.5 1,299,073 + -0.3 1,299,074 - -0.2 1,299,155 + PS417_05840 0.14 +1.0 1,299,155 + PS417_05840 0.14 -0.5 1,299,405 + PS417_05840 0.52 +1.1 1,299,406 - PS417_05840 0.53 -1.2 1,299,713 - +1.2 1,299,783 + -2.2 1,299,784 - +1.3 1,299,789 + -0.5 1,299,789 + -1.3 1,299,790 - +0.9 1,299,790 - -0.8 1,299,826 - -0.8 1,300,150 + -0.1 1,300,150 + -0.4 1,300,277 + PS417_05850 0.13 -0.9 1,300,277 + PS417_05850 0.13 +0.1 1,300,646 - PS417_05850 0.53 +0.0 1,300,646 - PS417_05850 0.53 +0.2
Or see this region's nucleotide sequence