Strain Fitness in Pseudomonas putida KT2440 around PP_4779

Experiment: Temperature shift 30_to_25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4776 and PP_4777 are separated by 53 nucleotidesPP_4777 and PP_4778 are separated by 35 nucleotidesPP_4778 and PP_4779 are separated by 6 nucleotidesPP_4779 and PP_4780 are separated by 105 nucleotides PP_4776: PP_4776 - AsnC family transcriptional regulator, at 5,437,954 to 5,438,430 _4776 PP_4777: PP_4777 - conserved protein of unknown function, at 5,438,484 to 5,438,687 _4777 PP_4778: PP_4778 - 23S rRNA pseudouridine 2457 synthase, at 5,438,723 to 5,439,355 _4778 PP_4779: PP_4779 - AMP nucleosidase, at 5,439,362 to 5,440,825 _4779 PP_4780: PP_4780 - putative Acyl-CoA dehydrogenase, at 5,440,931 to 5,442,583 _4780 Position (kb) 5439 5440 5441Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5438.429 kb on - strandat 5438.429 kb on - strandat 5438.449 kb on + strandat 5438.450 kb on - strandat 5438.450 kb on - strandat 5438.450 kb on - strandat 5438.450 kb on - strandat 5438.451 kb on + strandat 5438.452 kb on - strandat 5438.683 kb on + strandat 5438.683 kb on + strandat 5438.683 kb on + strandat 5438.683 kb on + strandat 5438.683 kb on + strandat 5438.683 kb on + strandat 5438.684 kb on - strandat 5438.684 kb on - strandat 5438.684 kb on - strandat 5438.684 kb on - strandat 5438.685 kb on + strandat 5438.686 kb on - strandat 5438.686 kb on - strandat 5438.686 kb on - strandat 5438.724 kb on + strandat 5438.725 kb on - strandat 5438.855 kb on - strand, within PP_4778at 5439.054 kb on + strand, within PP_4778at 5439.054 kb on + strand, within PP_4778at 5439.054 kb on + strand, within PP_4778at 5439.055 kb on - strand, within PP_4778at 5439.055 kb on - strand, within PP_4778at 5439.164 kb on + strand, within PP_4778at 5439.164 kb on + strand, within PP_4778at 5439.165 kb on - strand, within PP_4778at 5439.338 kb on - strandat 5439.483 kb on + strandat 5439.483 kb on + strandat 5439.483 kb on + strandat 5439.484 kb on - strandat 5439.484 kb on - strandat 5439.776 kb on + strand, within PP_4779at 5439.777 kb on - strand, within PP_4779at 5439.844 kb on + strand, within PP_4779at 5439.846 kb on + strand, within PP_4779at 5439.846 kb on + strand, within PP_4779at 5439.846 kb on + strand, within PP_4779at 5439.846 kb on + strand, within PP_4779at 5439.846 kb on + strand, within PP_4779at 5439.847 kb on - strand, within PP_4779at 5439.847 kb on - strand, within PP_4779at 5439.847 kb on - strand, within PP_4779at 5439.847 kb on - strand, within PP_4779at 5439.847 kb on - strand, within PP_4779at 5439.847 kb on - strand, within PP_4779at 5439.847 kb on - strand, within PP_4779at 5439.847 kb on - strand, within PP_4779at 5439.847 kb on - strand, within PP_4779at 5439.847 kb on - strand, within PP_4779at 5439.847 kb on - strand, within PP_4779at 5439.847 kb on - strand, within PP_4779at 5439.864 kb on + strand, within PP_4779at 5439.998 kb on - strand, within PP_4779at 5439.998 kb on - strand, within PP_4779at 5440.029 kb on + strand, within PP_4779at 5440.029 kb on + strand, within PP_4779at 5440.132 kb on + strand, within PP_4779at 5440.132 kb on + strand, within PP_4779at 5440.132 kb on + strand, within PP_4779at 5440.132 kb on + strand, within PP_4779at 5440.132 kb on + strand, within PP_4779at 5440.133 kb on - strand, within PP_4779at 5440.133 kb on - strand, within PP_4779at 5440.133 kb on - strand, within PP_4779at 5440.136 kb on + strand, within PP_4779at 5440.136 kb on + strand, within PP_4779at 5440.137 kb on - strand, within PP_4779at 5440.137 kb on - strand, within PP_4779at 5440.194 kb on + strand, within PP_4779at 5440.194 kb on + strand, within PP_4779at 5440.195 kb on - strandat 5440.195 kb on - strand, within PP_4779at 5440.203 kb on + strand, within PP_4779at 5440.203 kb on + strand, within PP_4779at 5440.204 kb on - strand, within PP_4779at 5440.204 kb on - strand, within PP_4779at 5440.204 kb on - strand, within PP_4779at 5440.229 kb on + strand, within PP_4779at 5440.229 kb on + strand, within PP_4779at 5440.229 kb on + strand, within PP_4779at 5440.229 kb on + strand, within PP_4779at 5440.230 kb on - strand, within PP_4779at 5440.230 kb on - strand, within PP_4779at 5440.230 kb on - strand, within PP_4779at 5440.254 kb on + strand, within PP_4779at 5440.254 kb on + strand, within PP_4779at 5440.255 kb on - strand, within PP_4779at 5440.271 kb on + strand, within PP_4779at 5440.271 kb on + strand, within PP_4779at 5440.339 kb on - strand, within PP_4779at 5440.339 kb on - strand, within PP_4779at 5440.339 kb on - strand, within PP_4779at 5440.455 kb on + strand, within PP_4779at 5440.455 kb on + strand, within PP_4779at 5440.456 kb on - strand, within PP_4779at 5440.493 kb on + strand, within PP_4779at 5440.506 kb on + strand, within PP_4779at 5440.506 kb on + strand, within PP_4779at 5440.506 kb on + strand, within PP_4779at 5440.506 kb on + strand, within PP_4779at 5440.507 kb on - strand, within PP_4779at 5440.542 kb on + strand, within PP_4779at 5440.581 kb on + strand, within PP_4779at 5440.581 kb on + strand, within PP_4779at 5440.581 kb on + strand, within PP_4779at 5440.582 kb on - strand, within PP_4779at 5440.582 kb on - strand, within PP_4779at 5440.609 kb on - strand, within PP_4779at 5440.644 kb on + strand, within PP_4779at 5440.644 kb on + strand, within PP_4779at 5440.644 kb on + strand, within PP_4779at 5440.645 kb on - strand, within PP_4779at 5440.647 kb on + strand, within PP_4779at 5440.647 kb on + strand, within PP_4779at 5440.647 kb on + strand, within PP_4779at 5440.647 kb on + strand, within PP_4779at 5440.648 kb on - strand, within PP_4779at 5440.738 kb on + strandat 5440.738 kb on + strandat 5440.738 kb on + strandat 5440.739 kb on - strandat 5440.879 kb on + strandat 5440.880 kb on - strandat 5440.883 kb on + strandat 5440.883 kb on + strandat 5440.883 kb on + strandat 5440.883 kb on + strandat 5440.883 kb on + strandat 5440.884 kb on - strandat 5440.884 kb on - strandat 5440.884 kb on - strandat 5440.884 kb on - strandat 5440.884 kb on - strandat 5440.932 kb on + strandat 5440.932 kb on + strandat 5440.952 kb on - strandat 5440.979 kb on + strandat 5440.979 kb on + strandat 5440.980 kb on - strandat 5440.980 kb on - strandat 5440.980 kb on - strandat 5440.980 kb on - strandat 5441.002 kb on - strandat 5441.101 kb on + strand, within PP_4780at 5441.234 kb on + strand, within PP_4780at 5441.355 kb on + strand, within PP_4780at 5441.422 kb on - strand, within PP_4780at 5441.811 kb on + strand, within PP_4780at 5441.812 kb on - strand, within PP_4780at 5441.812 kb on - strand, within PP_4780

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Per-strain Table

Position Strand Gene LocusTag Fraction Temperature shift 30_to_25
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5,438,429 - -1.0
5,438,429 - -0.1
5,438,449 + +1.7
5,438,450 - -0.3
5,438,450 - +0.8
5,438,450 - -0.6
5,438,450 - -3.3
5,438,451 + -0.5
5,438,452 - -2.2
5,438,683 + +0.1
5,438,683 + +0.2
5,438,683 + -0.7
5,438,683 + +1.2
5,438,683 + -0.7
5,438,683 + -0.0
5,438,684 - -2.0
5,438,684 - +0.9
5,438,684 - +0.6
5,438,684 - -2.1
5,438,685 + -1.2
5,438,686 - +1.7
5,438,686 - -0.3
5,438,686 - +0.6
5,438,724 + -0.6
5,438,725 - -1.7
5,438,855 - PP_4778 0.21 -0.6
5,439,054 + PP_4778 0.52 +0.1
5,439,054 + PP_4778 0.52 -3.3
5,439,054 + PP_4778 0.52 -0.1
5,439,055 - PP_4778 0.52 -2.9
5,439,055 - PP_4778 0.52 +3.1
5,439,164 + PP_4778 0.70 +0.7
5,439,164 + PP_4778 0.70 +0.0
5,439,165 - PP_4778 0.70 -2.3
5,439,338 - -0.9
5,439,483 + -1.7
5,439,483 + +0.3
5,439,483 + +2.2
5,439,484 - +1.5
5,439,484 - +0.2
5,439,776 + PP_4779 0.28 +0.1
5,439,777 - PP_4779 0.28 +0.2
5,439,844 + PP_4779 0.33 +0.2
5,439,846 + PP_4779 0.33 +0.3
5,439,846 + PP_4779 0.33 +0.1
5,439,846 + PP_4779 0.33 +0.0
5,439,846 + PP_4779 0.33 -0.3
5,439,846 + PP_4779 0.33 -2.1
5,439,847 - PP_4779 0.33 +0.4
5,439,847 - PP_4779 0.33 -2.2
5,439,847 - PP_4779 0.33 -0.6
5,439,847 - PP_4779 0.33 +0.8
5,439,847 - PP_4779 0.33 +1.6
5,439,847 - PP_4779 0.33 +0.4
5,439,847 - PP_4779 0.33 +0.3
5,439,847 - PP_4779 0.33 +0.7
5,439,847 - PP_4779 0.33 +0.2
5,439,847 - PP_4779 0.33 +0.3
5,439,847 - PP_4779 0.33 -0.6
5,439,847 - PP_4779 0.33 -0.3
5,439,864 + PP_4779 0.34 +0.1
5,439,998 - PP_4779 0.43 +0.3
5,439,998 - PP_4779 0.43 +1.4
5,440,029 + PP_4779 0.46 +0.2
5,440,029 + PP_4779 0.46 -1.2
5,440,132 + PP_4779 0.53 -1.1
5,440,132 + PP_4779 0.53 -0.9
5,440,132 + PP_4779 0.53 +0.1
5,440,132 + PP_4779 0.53 -1.4
5,440,132 + PP_4779 0.53 -0.5
5,440,133 - PP_4779 0.53 -0.4
5,440,133 - PP_4779 0.53 +0.7
5,440,133 - PP_4779 0.53 -0.4
5,440,136 + PP_4779 0.53 +0.6
5,440,136 + PP_4779 0.53 +0.1
5,440,137 - PP_4779 0.53 -0.5
5,440,137 - PP_4779 0.53 -2.6
5,440,194 + PP_4779 0.57 +0.6
5,440,194 + PP_4779 0.57 +0.6
5,440,195 - +0.3
5,440,195 - PP_4779 0.57 +1.0
5,440,203 + PP_4779 0.57 -0.1
5,440,203 + PP_4779 0.57 +0.8
5,440,204 - PP_4779 0.58 -1.2
5,440,204 - PP_4779 0.58 +0.3
5,440,204 - PP_4779 0.58 +1.1
5,440,229 + PP_4779 0.59 -0.8
5,440,229 + PP_4779 0.59 -0.1
5,440,229 + PP_4779 0.59 +1.1
5,440,229 + PP_4779 0.59 -1.3
5,440,230 - PP_4779 0.59 +0.9
5,440,230 - PP_4779 0.59 +1.1
5,440,230 - PP_4779 0.59 -0.8
5,440,254 + PP_4779 0.61 -0.8
5,440,254 + PP_4779 0.61 -0.2
5,440,255 - PP_4779 0.61 +0.4
5,440,271 + PP_4779 0.62 -0.4
5,440,271 + PP_4779 0.62 -0.4
5,440,339 - PP_4779 0.67 +0.8
5,440,339 - PP_4779 0.67 -0.2
5,440,339 - PP_4779 0.67 -0.1
5,440,455 + PP_4779 0.75 +0.1
5,440,455 + PP_4779 0.75 -0.2
5,440,456 - PP_4779 0.75 +0.4
5,440,493 + PP_4779 0.77 +0.0
5,440,506 + PP_4779 0.78 +0.4
5,440,506 + PP_4779 0.78 +0.4
5,440,506 + PP_4779 0.78 +0.1
5,440,506 + PP_4779 0.78 +0.5
5,440,507 - PP_4779 0.78 +0.4
5,440,542 + PP_4779 0.81 -0.0
5,440,581 + PP_4779 0.83 +0.9
5,440,581 + PP_4779 0.83 -0.6
5,440,581 + PP_4779 0.83 -0.6
5,440,582 - PP_4779 0.83 -1.1
5,440,582 - PP_4779 0.83 -0.8
5,440,609 - PP_4779 0.85 +0.7
5,440,644 + PP_4779 0.88 -1.2
5,440,644 + PP_4779 0.88 +0.3
5,440,644 + PP_4779 0.88 +1.8
5,440,645 - PP_4779 0.88 -0.1
5,440,647 + PP_4779 0.88 +1.1
5,440,647 + PP_4779 0.88 +0.6
5,440,647 + PP_4779 0.88 +0.4
5,440,647 + PP_4779 0.88 -0.7
5,440,648 - PP_4779 0.88 +1.2
5,440,738 + +0.5
5,440,738 + +1.0
5,440,738 + +0.5
5,440,739 - +1.0
5,440,879 + -1.1
5,440,880 - +0.4
5,440,883 + +0.6
5,440,883 + +0.7
5,440,883 + -0.4
5,440,883 + -0.1
5,440,883 + +0.6
5,440,884 - -3.8
5,440,884 - -0.9
5,440,884 - -0.1
5,440,884 - +0.5
5,440,884 - -0.7
5,440,932 + -1.2
5,440,932 + +1.1
5,440,952 - +0.8
5,440,979 + +1.2
5,440,979 + +0.2
5,440,980 - -1.1
5,440,980 - -0.3
5,440,980 - -0.2
5,440,980 - +0.9
5,441,002 - +0.5
5,441,101 + PP_4780 0.10 +1.8
5,441,234 + PP_4780 0.18 -0.6
5,441,355 + PP_4780 0.26 -1.9
5,441,422 - PP_4780 0.30 +0.1
5,441,811 + PP_4780 0.53 -0.6
5,441,812 - PP_4780 0.53 +1.2
5,441,812 - PP_4780 0.53 +0.6

Or see this region's nucleotide sequence