Strain Fitness in Pseudomonas simiae WCS417 around PS417_27770

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_27765 and PS417_27770 are separated by 27 nucleotidesPS417_27770 and PS417_27775 are separated by 141 nucleotides PS417_27765: PS417_27765 - peptide ABC transporter substrate-binding protein, at 5,987,336 to 5,988,928 _27765 PS417_27770: PS417_27770 - hypothetical protein, at 5,988,956 to 5,989,630 _27770 PS417_27775: PS417_27775 - phosphopantothenoylcysteine decarboxylase, at 5,989,772 to 5,990,980 _27775 Position (kb) 5988 5989 5990Strain fitness (log2 ratio) -2 -1 0 1 2at 5987.993 kb on + strand, within PS417_27765at 5988.012 kb on - strand, within PS417_27765at 5988.295 kb on - strand, within PS417_27765at 5988.295 kb on - strand, within PS417_27765at 5988.350 kb on + strand, within PS417_27765at 5988.350 kb on + strand, within PS417_27765at 5988.464 kb on - strand, within PS417_27765at 5988.763 kb on - strand, within PS417_27765at 5988.770 kb on - strandat 5989.140 kb on + strand, within PS417_27770at 5989.173 kb on + strand, within PS417_27770at 5989.173 kb on + strand, within PS417_27770at 5989.625 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
remove
5,987,993 + PS417_27765 0.41 -0.2
5,988,012 - PS417_27765 0.42 +0.5
5,988,295 - PS417_27765 0.60 +0.1
5,988,295 - PS417_27765 0.60 +0.2
5,988,350 + PS417_27765 0.64 +0.0
5,988,350 + PS417_27765 0.64 -2.0
5,988,464 - PS417_27765 0.71 +0.3
5,988,763 - PS417_27765 0.90 -0.4
5,988,770 - +1.9
5,989,140 + PS417_27770 0.27 -2.0
5,989,173 + PS417_27770 0.32 -1.1
5,989,173 + PS417_27770 0.32 -0.3
5,989,625 - +0.0

Or see this region's nucleotide sequence