Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_16745 and PS417_16750 are separated by 360 nucleotides PS417_16750 and PS417_16755 overlap by 4 nucleotides
PS417_16745: PS417_16745 - TetR family transcriptional regulator, at 3,652,483 to 3,653,241
_16745
PS417_16750: PS417_16750 - ABC transporter ATP-binding protein, at 3,653,602 to 3,654,306
_16750
PS417_16755: PS417_16755 - ABC transporter permease, at 3,654,303 to 3,655,520
_16755
Position (kb)
3653
3654
3655 Strain fitness (log2 ratio)
-1
0
1 at 3653.241 kb on + strand at 3653.241 kb on + strand at 3653.242 kb on - strand at 3653.318 kb on - strand at 3653.318 kb on - strand at 3653.334 kb on - strand at 3653.438 kb on + strand at 3653.439 kb on - strand at 3653.610 kb on + strand at 3653.660 kb on - strand at 3653.812 kb on + strand, within PS417_16750 at 3653.832 kb on + strand, within PS417_16750 at 3654.771 kb on + strand, within PS417_16755 at 3654.772 kb on - strand, within PS417_16755 at 3654.772 kb on - strand, within PS417_16755 at 3654.859 kb on - strand, within PS417_16755 at 3654.859 kb on - strand, within PS417_16755 at 3654.966 kb on + strand, within PS417_16755 at 3654.966 kb on + strand, within PS417_16755 at 3654.966 kb on + strand, within PS417_16755 at 3654.967 kb on - strand, within PS417_16755 at 3654.967 kb on - strand, within PS417_16755
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 3,653,241 + +0.8 3,653,241 + -1.0 3,653,242 - -1.1 3,653,318 - +0.8 3,653,318 - -0.1 3,653,334 - -0.2 3,653,438 + +0.5 3,653,439 - +0.2 3,653,610 + -0.7 3,653,660 - -1.5 3,653,812 + PS417_16750 0.30 -0.9 3,653,832 + PS417_16750 0.33 -1.0 3,654,771 + PS417_16755 0.38 +0.5 3,654,772 - PS417_16755 0.39 +0.6 3,654,772 - PS417_16755 0.39 -0.9 3,654,859 - PS417_16755 0.46 +0.2 3,654,859 - PS417_16755 0.46 +0.3 3,654,966 + PS417_16755 0.54 -0.7 3,654,966 + PS417_16755 0.54 -0.2 3,654,966 + PS417_16755 0.54 -0.2 3,654,967 - PS417_16755 0.55 +0.1 3,654,967 - PS417_16755 0.55 +0.1
Or see this region's nucleotide sequence