Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27280 and PS417_27285 overlap by 4 nucleotides PS417_27285 and PS417_27290 are separated by 19 nucleotides PS417_27290 and PS417_27295 are separated by 138 nucleotides PS417_27295 and PS417_27300 overlap by 4 nucleotides
PS417_27280: PS417_27280 - 2-octaprenyl-6-methoxyphenyl hydroxylase, at 5,888,419 to 5,889,606
_27280
PS417_27285: PS417_27285 - Xaa-Pro aminopeptidase, at 5,889,603 to 5,890,925
_27285
PS417_27290: PS417_27290 - hypothetical protein, at 5,890,945 to 5,891,502
_27290
PS417_27295: PS417_27295 - hypothetical protein, at 5,891,641 to 5,891,850
_27295
PS417_27300: PS417_27300 - cell division protein ZapA, at 5,891,847 to 5,892,164
_27300
Position (kb) 5889
5890
5891 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5889.761 kb on + strand, within PS417_27285 at 5889.762 kb on - strand, within PS417_27285 at 5889.762 kb on - strand, within PS417_27285 at 5889.762 kb on - strand, within PS417_27285 at 5889.763 kb on + strand, within PS417_27285 at 5889.764 kb on - strand, within PS417_27285 at 5889.764 kb on - strand, within PS417_27285 at 5889.764 kb on - strand, within PS417_27285 at 5889.830 kb on - strand, within PS417_27285 at 5889.883 kb on + strand, within PS417_27285 at 5889.883 kb on + strand, within PS417_27285 at 5889.883 kb on + strand, within PS417_27285 at 5889.883 kb on + strand, within PS417_27285 at 5889.883 kb on + strand, within PS417_27285 at 5889.884 kb on - strand, within PS417_27285 at 5889.884 kb on - strand, within PS417_27285 at 5889.884 kb on - strand, within PS417_27285 at 5889.884 kb on - strand, within PS417_27285 at 5889.893 kb on + strand, within PS417_27285 at 5889.893 kb on + strand, within PS417_27285 at 5889.895 kb on + strand, within PS417_27285 at 5889.895 kb on + strand, within PS417_27285 at 5889.895 kb on + strand, within PS417_27285 at 5889.896 kb on - strand, within PS417_27285 at 5889.896 kb on - strand, within PS417_27285 at 5890.047 kb on + strand, within PS417_27285 at 5890.048 kb on - strand, within PS417_27285 at 5890.050 kb on + strand, within PS417_27285 at 5890.051 kb on - strand, within PS417_27285 at 5890.051 kb on - strand, within PS417_27285 at 5890.051 kb on - strand, within PS417_27285 at 5890.051 kb on - strand, within PS417_27285 at 5890.051 kb on - strand, within PS417_27285 at 5890.051 kb on - strand at 5890.123 kb on + strand, within PS417_27285 at 5890.401 kb on - strand, within PS417_27285 at 5890.401 kb on - strand, within PS417_27285 at 5890.544 kb on - strand, within PS417_27285 at 5890.544 kb on - strand, within PS417_27285 at 5890.706 kb on - strand, within PS417_27285 at 5890.706 kb on - strand, within PS417_27285 at 5890.900 kb on + strand at 5890.901 kb on - strand at 5890.901 kb on - strand at 5890.901 kb on - strand at 5891.028 kb on - strand, within PS417_27290 at 5891.045 kb on + strand, within PS417_27290 at 5891.046 kb on - strand, within PS417_27290 at 5891.496 kb on + strand at 5891.497 kb on - strand at 5891.533 kb on + strand at 5891.549 kb on - strand at 5891.553 kb on + strand at 5891.554 kb on - strand at 5891.568 kb on + strand at 5891.569 kb on - strand at 5891.577 kb on + strand at 5891.687 kb on + strand, within PS417_27295 at 5891.709 kb on + strand, within PS417_27295 at 5891.729 kb on + strand, within PS417_27295 at 5891.729 kb on + strand, within PS417_27295 at 5891.732 kb on + strand, within PS417_27295 at 5891.732 kb on + strand, within PS417_27295
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 5,889,761 + PS417_27285 0.12 -1.1 5,889,762 - PS417_27285 0.12 +1.1 5,889,762 - PS417_27285 0.12 +1.2 5,889,762 - PS417_27285 0.12 +1.3 5,889,763 + PS417_27285 0.12 -1.1 5,889,764 - PS417_27285 0.12 +1.5 5,889,764 - PS417_27285 0.12 +1.1 5,889,764 - PS417_27285 0.12 +1.2 5,889,830 - PS417_27285 0.17 +1.8 5,889,883 + PS417_27285 0.21 +0.1 5,889,883 + PS417_27285 0.21 +0.3 5,889,883 + PS417_27285 0.21 +1.9 5,889,883 + PS417_27285 0.21 +2.7 5,889,883 + PS417_27285 0.21 +0.7 5,889,884 - PS417_27285 0.21 +0.6 5,889,884 - PS417_27285 0.21 +1.0 5,889,884 - PS417_27285 0.21 +1.4 5,889,884 - PS417_27285 0.21 +1.0 5,889,893 + PS417_27285 0.22 +0.7 5,889,893 + PS417_27285 0.22 +0.3 5,889,895 + PS417_27285 0.22 +1.0 5,889,895 + PS417_27285 0.22 +1.5 5,889,895 + PS417_27285 0.22 +0.2 5,889,896 - PS417_27285 0.22 +0.7 5,889,896 - PS417_27285 0.22 +1.6 5,890,047 + PS417_27285 0.34 +0.6 5,890,048 - PS417_27285 0.34 +1.2 5,890,050 + PS417_27285 0.34 -0.2 5,890,051 - PS417_27285 0.34 +0.9 5,890,051 - PS417_27285 0.34 +1.1 5,890,051 - PS417_27285 0.34 -0.4 5,890,051 - PS417_27285 0.34 +1.0 5,890,051 - PS417_27285 0.34 -0.4 5,890,051 - -0.7 5,890,123 + PS417_27285 0.39 +0.7 5,890,401 - PS417_27285 0.60 +1.3 5,890,401 - PS417_27285 0.60 +0.9 5,890,544 - PS417_27285 0.71 +1.0 5,890,544 - PS417_27285 0.71 +0.7 5,890,706 - PS417_27285 0.83 +0.9 5,890,706 - PS417_27285 0.83 -0.7 5,890,900 + +1.4 5,890,901 - +0.4 5,890,901 - +1.5 5,890,901 - +0.5 5,891,028 - PS417_27290 0.15 -0.0 5,891,045 + PS417_27290 0.18 +0.2 5,891,046 - PS417_27290 0.18 -0.7 5,891,496 + +1.7 5,891,497 - +0.2 5,891,533 + +2.7 5,891,549 - -0.7 5,891,553 + +0.8 5,891,554 - -2.7 5,891,568 + +1.5 5,891,569 - -0.4 5,891,577 + +1.8 5,891,687 + PS417_27295 0.22 -0.8 5,891,709 + PS417_27295 0.32 -1.0 5,891,729 + PS417_27295 0.42 +0.1 5,891,729 + PS417_27295 0.42 -0.1 5,891,732 + PS417_27295 0.43 -0.3 5,891,732 + PS417_27295 0.43 +0.6
Or see this region's nucleotide sequence