Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_22150 and PS417_22155 are separated by 115 nucleotides PS417_22155 and PS417_22160 are separated by 114 nucleotides
PS417_22150: PS417_22150 - D-mannose isomerase (EC 5.3.1.7) (from data) , at 4,798,958 to 4,800,217
_22150
PS417_22155: PS417_22155 - ATPase, at 4,800,333 to 4,801,178
_22155
PS417_22160: PS417_22160 - 3-beta hydroxysteroid dehydrogenase, at 4,801,293 to 4,802,291
_22160
Position (kb)
4800
4801
4802 Strain fitness (log2 ratio)
-1
0
1
2
3 at 4799.579 kb on - strand, within PS417_22150 at 4799.694 kb on + strand, within PS417_22150 at 4799.776 kb on + strand, within PS417_22150 at 4799.823 kb on - strand, within PS417_22150 at 4799.865 kb on + strand, within PS417_22150 at 4800.165 kb on + strand at 4800.257 kb on - strand at 4800.281 kb on + strand at 4800.282 kb on - strand at 4800.282 kb on - strand at 4800.414 kb on - strand at 4800.414 kb on - strand at 4800.453 kb on - strand, within PS417_22155 at 4800.533 kb on + strand, within PS417_22155 at 4801.163 kb on + strand at 4801.163 kb on + strand at 4801.180 kb on + strand at 4801.180 kb on + strand at 4801.180 kb on + strand at 4801.180 kb on + strand at 4801.180 kb on + strand at 4801.181 kb on - strand at 4801.181 kb on - strand at 4801.220 kb on + strand at 4801.221 kb on - strand at 4801.221 kb on - strand at 4801.295 kb on - strand at 4801.295 kb on - strand at 4801.372 kb on + strand at 4801.372 kb on + strand at 4801.511 kb on - strand, within PS417_22160 at 4801.570 kb on + strand, within PS417_22160 at 4801.570 kb on + strand, within PS417_22160 at 4801.570 kb on + strand, within PS417_22160 at 4801.571 kb on - strand, within PS417_22160 at 4801.571 kb on - strand, within PS417_22160 at 4801.619 kb on - strand, within PS417_22160 at 4801.945 kb on + strand, within PS417_22160 at 4801.946 kb on - strand, within PS417_22160 at 4802.051 kb on - strand, within PS417_22160 at 4802.051 kb on - strand, within PS417_22160 at 4802.051 kb on - strand, within PS417_22160
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 4,799,579 - PS417_22150 0.49 -0.1 4,799,694 + PS417_22150 0.58 +1.9 4,799,776 + PS417_22150 0.65 +0.9 4,799,823 - PS417_22150 0.69 +0.0 4,799,865 + PS417_22150 0.72 -0.1 4,800,165 + -0.5 4,800,257 - +0.1 4,800,281 + +0.2 4,800,282 - +0.4 4,800,282 - +0.0 4,800,414 - -0.4 4,800,414 - -0.5 4,800,453 - PS417_22155 0.14 -0.6 4,800,533 + PS417_22155 0.24 +0.0 4,801,163 + -0.4 4,801,163 + -1.3 4,801,180 + +0.1 4,801,180 + +0.3 4,801,180 + +0.0 4,801,180 + -0.1 4,801,180 + +1.7 4,801,181 - +0.9 4,801,181 - +0.1 4,801,220 + -1.3 4,801,221 - +0.1 4,801,221 - -0.3 4,801,295 - +1.0 4,801,295 - +2.9 4,801,372 + +0.6 4,801,372 + -0.1 4,801,511 - PS417_22160 0.22 -1.0 4,801,570 + PS417_22160 0.28 -0.0 4,801,570 + PS417_22160 0.28 -0.3 4,801,570 + PS417_22160 0.28 +2.8 4,801,571 - PS417_22160 0.28 -0.4 4,801,571 - PS417_22160 0.28 +0.1 4,801,619 - PS417_22160 0.33 -0.4 4,801,945 + PS417_22160 0.65 +1.4 4,801,946 - PS417_22160 0.65 -0.3 4,802,051 - PS417_22160 0.76 +0.0 4,802,051 - PS417_22160 0.76 -0.6 4,802,051 - PS417_22160 0.76 +1.7
Or see this region's nucleotide sequence