Strain Fitness in Pseudomonas simiae WCS417 around PS417_15755

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_15745 and PS417_15750 overlap by 7 nucleotidesPS417_15750 and PS417_15755 are separated by 10 nucleotidesPS417_15755 and PS417_15760 are separated by 9 nucleotides PS417_15745: PS417_15745 - lipid carrier protein, at 3,453,395 to 3,453,856 _15745 PS417_15750: PS417_15750 - protease, at 3,453,850 to 3,454,740 _15750 PS417_15755: PS417_15755 - protease, at 3,454,751 to 3,455,746 _15755 PS417_15760: PS417_15760 - molybdenum cofactor biosynthesis protein MoaA, at 3,455,756 to 3,456,982 _15760 Position (kb) 3454 3455 3456Strain fitness (log2 ratio) -2 -1 0 1 2at 3453.752 kb on - strandat 3454.142 kb on + strandat 3454.382 kb on + strand, within PS417_15750at 3454.543 kb on + strand, within PS417_15750at 3454.644 kb on - strand, within PS417_15750at 3454.680 kb on - strandat 3454.710 kb on - strandat 3454.909 kb on - strand, within PS417_15755at 3455.206 kb on - strand, within PS417_15755at 3455.206 kb on - strand, within PS417_15755at 3455.443 kb on - strand, within PS417_15755at 3455.563 kb on - strand, within PS417_15755at 3455.563 kb on - strand, within PS417_15755at 3455.563 kb on - strand, within PS417_15755at 3455.563 kb on - strand, within PS417_15755at 3455.563 kb on - strand, within PS417_15755at 3455.669 kb on + strandat 3455.670 kb on - strandat 3455.673 kb on + strandat 3455.674 kb on - strandat 3455.674 kb on - strandat 3455.674 kb on - strandat 3455.805 kb on - strandat 3455.831 kb on + strandat 3456.045 kb on - strand, within PS417_15760at 3456.372 kb on + strand, within PS417_15760at 3456.373 kb on - strand, within PS417_15760at 3456.373 kb on - strand, within PS417_15760at 3456.570 kb on - strand, within PS417_15760

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
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3,453,752 - +1.0
3,454,142 + +1.1
3,454,382 + PS417_15750 0.60 +0.5
3,454,543 + PS417_15750 0.78 +0.2
3,454,644 - PS417_15750 0.89 +0.1
3,454,680 - -0.8
3,454,710 - +1.3
3,454,909 - PS417_15755 0.16 -1.9
3,455,206 - PS417_15755 0.46 +0.2
3,455,206 - PS417_15755 0.46 -1.7
3,455,443 - PS417_15755 0.69 +0.0
3,455,563 - PS417_15755 0.82 +0.0
3,455,563 - PS417_15755 0.82 -0.3
3,455,563 - PS417_15755 0.82 -1.3
3,455,563 - PS417_15755 0.82 -0.1
3,455,563 - PS417_15755 0.82 +0.3
3,455,669 + +0.7
3,455,670 - -0.2
3,455,673 + +1.9
3,455,674 - -1.5
3,455,674 - +0.4
3,455,674 - +0.3
3,455,805 - -0.4
3,455,831 + -0.4
3,456,045 - PS417_15760 0.24 -0.3
3,456,372 + PS417_15760 0.50 +1.2
3,456,373 - PS417_15760 0.50 -1.2
3,456,373 - PS417_15760 0.50 -0.7
3,456,570 - PS417_15760 0.66 +0.1

Or see this region's nucleotide sequence