Strain Fitness in Pseudomonas simiae WCS417 around PS417_11235

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_11230 and PS417_11235 are separated by 131 nucleotidesPS417_11235 and PS417_11240 are separated by 217 nucleotidesPS417_11240 and PS417_11245 overlap by 4 nucleotides PS417_11230: PS417_11230 - hydroxyacid dehydrogenase, at 2,407,978 to 2,409,045 _11230 PS417_11235: PS417_11235 - hypothetical protein, at 2,409,177 to 2,409,476 _11235 PS417_11240: PS417_11240 - VreA, at 2,409,694 to 2,410,338 _11240 PS417_11245: PS417_11245 - RNA polymerase subunit sigma-24, at 2,410,335 to 2,410,880 _11245 Position (kb) 2409 2410Strain fitness (log2 ratio) -2 -1 0 1 2at 2408.324 kb on - strand, within PS417_11230at 2408.324 kb on - strand, within PS417_11230at 2408.470 kb on + strandat 2408.471 kb on - strand, within PS417_11230at 2408.963 kb on - strandat 2409.009 kb on + strandat 2409.109 kb on - strandat 2409.109 kb on - strandat 2409.114 kb on + strandat 2409.162 kb on - strandat 2409.287 kb on + strand, within PS417_11235at 2409.528 kb on - strandat 2409.575 kb on + strandat 2409.793 kb on + strand, within PS417_11240at 2409.932 kb on - strandat 2410.383 kb on + strandat 2410.459 kb on - strand, within PS417_11245

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
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2,408,324 - PS417_11230 0.32 -2.0
2,408,324 - PS417_11230 0.32 -0.2
2,408,470 + +2.7
2,408,471 - PS417_11230 0.46 -0.3
2,408,963 - -0.0
2,409,009 + -0.6
2,409,109 - +1.1
2,409,109 - -0.4
2,409,114 + +0.2
2,409,162 - +0.3
2,409,287 + PS417_11235 0.37 -0.5
2,409,528 - -1.2
2,409,575 + -0.7
2,409,793 + PS417_11240 0.15 -0.5
2,409,932 - +0.1
2,410,383 + -0.5
2,410,459 - PS417_11245 0.23 -0.9

Or see this region's nucleotide sequence