Strain Fitness in Pseudomonas simiae WCS417 around PS417_06580

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_06570 and PS417_06575 overlap by 4 nucleotidesPS417_06575 and PS417_06580 overlap by 4 nucleotidesPS417_06580 and PS417_06585 overlap by 4 nucleotidesPS417_06585 and PS417_06590 are separated by 23 nucleotides PS417_06570: PS417_06570 - LysR family transcriptional regulator, at 1,456,224 to 1,457,132 _06570 PS417_06575: PS417_06575 - DoxX, at 1,457,129 to 1,457,614 _06575 PS417_06580: PS417_06580 - hypothetical protein, at 1,457,611 to 1,458,387 _06580 PS417_06585: PS417_06585 - hypothetical protein, at 1,458,384 to 1,459,262 _06585 PS417_06590: PS417_06590 - membrane protein, at 1,459,286 to 1,459,582 _06590 Position (kb) 1457 1458 1459Strain fitness (log2 ratio) -2 -1 0 1 2at 1456.806 kb on + strand, within PS417_06570at 1456.831 kb on - strand, within PS417_06570at 1456.928 kb on + strand, within PS417_06570at 1456.947 kb on + strand, within PS417_06570at 1456.947 kb on + strand, within PS417_06570at 1456.948 kb on - strand, within PS417_06570at 1456.948 kb on - strand, within PS417_06570at 1456.948 kb on - strand, within PS417_06570at 1457.025 kb on + strand, within PS417_06570at 1457.198 kb on + strand, within PS417_06575at 1457.198 kb on + strand, within PS417_06575at 1457.553 kb on + strand, within PS417_06575at 1457.609 kb on - strandat 1457.609 kb on - strandat 1457.620 kb on + strandat 1457.636 kb on + strandat 1457.668 kb on + strandat 1457.669 kb on - strandat 1457.729 kb on - strand, within PS417_06580at 1457.787 kb on + strand, within PS417_06580at 1458.075 kb on - strand, within PS417_06580at 1458.131 kb on + strand, within PS417_06580at 1458.217 kb on + strand, within PS417_06580at 1458.217 kb on + strand, within PS417_06580at 1458.217 kb on + strand, within PS417_06580at 1458.217 kb on + strand, within PS417_06580at 1458.217 kb on + strand, within PS417_06580at 1458.217 kb on + strand, within PS417_06580at 1458.218 kb on - strand, within PS417_06580at 1458.504 kb on + strand, within PS417_06585at 1458.504 kb on + strand, within PS417_06585at 1458.645 kb on + strand, within PS417_06585at 1458.650 kb on - strand, within PS417_06585at 1458.688 kb on + strand, within PS417_06585at 1458.688 kb on + strand, within PS417_06585at 1458.688 kb on + strand, within PS417_06585at 1458.688 kb on + strand, within PS417_06585at 1458.688 kb on + strand, within PS417_06585at 1458.689 kb on - strand, within PS417_06585at 1458.689 kb on - strand, within PS417_06585at 1458.788 kb on - strand, within PS417_06585at 1458.788 kb on - strand, within PS417_06585at 1458.834 kb on + strand, within PS417_06585at 1459.058 kb on - strand, within PS417_06585at 1459.081 kb on + strand, within PS417_06585at 1459.111 kb on + strand, within PS417_06585at 1459.111 kb on + strandat 1459.111 kb on + strand, within PS417_06585at 1459.111 kb on + strand, within PS417_06585at 1459.111 kb on + strand, within PS417_06585at 1459.267 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
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1,456,806 + PS417_06570 0.64 -0.4
1,456,831 - PS417_06570 0.67 -0.3
1,456,928 + PS417_06570 0.77 +0.0
1,456,947 + PS417_06570 0.80 -2.5
1,456,947 + PS417_06570 0.80 +0.4
1,456,948 - PS417_06570 0.80 -0.5
1,456,948 - PS417_06570 0.80 -0.1
1,456,948 - PS417_06570 0.80 -1.0
1,457,025 + PS417_06570 0.88 +0.4
1,457,198 + PS417_06575 0.14 -0.1
1,457,198 + PS417_06575 0.14 +1.4
1,457,553 + PS417_06575 0.87 +0.0
1,457,609 - +0.4
1,457,609 - +1.8
1,457,620 + -0.0
1,457,636 + +0.0
1,457,668 + -1.9
1,457,669 - +0.3
1,457,729 - PS417_06580 0.15 +0.2
1,457,787 + PS417_06580 0.23 -0.5
1,458,075 - PS417_06580 0.60 +0.6
1,458,131 + PS417_06580 0.67 +0.3
1,458,217 + PS417_06580 0.78 -0.1
1,458,217 + PS417_06580 0.78 -1.5
1,458,217 + PS417_06580 0.78 -0.3
1,458,217 + PS417_06580 0.78 -0.6
1,458,217 + PS417_06580 0.78 -0.1
1,458,217 + PS417_06580 0.78 -0.4
1,458,218 - PS417_06580 0.78 -0.4
1,458,504 + PS417_06585 0.14 +0.9
1,458,504 + PS417_06585 0.14 +0.8
1,458,645 + PS417_06585 0.30 -0.4
1,458,650 - PS417_06585 0.30 -1.9
1,458,688 + PS417_06585 0.35 +2.5
1,458,688 + PS417_06585 0.35 -1.0
1,458,688 + PS417_06585 0.35 -0.6
1,458,688 + PS417_06585 0.35 -0.5
1,458,688 + PS417_06585 0.35 -0.5
1,458,689 - PS417_06585 0.35 +0.4
1,458,689 - PS417_06585 0.35 +0.9
1,458,788 - PS417_06585 0.46 -2.0
1,458,788 - PS417_06585 0.46 +0.1
1,458,834 + PS417_06585 0.51 -0.1
1,459,058 - PS417_06585 0.77 -0.0
1,459,081 + PS417_06585 0.79 -0.1
1,459,111 + PS417_06585 0.83 +0.2
1,459,111 + +1.2
1,459,111 + PS417_06585 0.83 -0.0
1,459,111 + PS417_06585 0.83 -0.4
1,459,111 + PS417_06585 0.83 -0.1
1,459,267 - -1.0

Or see this region's nucleotide sequence