Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04970 and PS417_04975 are separated by 417 nucleotides PS417_04975 and PS417_04980 are separated by 181 nucleotides PS417_04980 and PS417_04985 are separated by 104 nucleotides
PS417_04970: PS417_04970 - hypothetical protein, at 1,105,945 to 1,106,574
_04970
PS417_04975: PS417_04975 - response regulator receiver protein, at 1,106,992 to 1,107,819
_04975
PS417_04980: PS417_04980 - response regulator receiver protein, at 1,108,001 to 1,108,636
_04980
PS417_04985: PS417_04985 - ketosteroid isomerase, at 1,108,741 to 1,109,211
_04985
Position (kb)
1106
1107
1108 Strain fitness (log2 ratio)
-2
-1
0
1 at 1106.276 kb on + strand, within PS417_04970 at 1106.720 kb on - strand at 1106.728 kb on + strand at 1106.729 kb on - strand at 1106.781 kb on + strand at 1106.810 kb on + strand at 1106.987 kb on + strand at 1106.988 kb on - strand at 1106.988 kb on - strand at 1107.447 kb on + strand, within PS417_04975 at 1107.447 kb on + strand, within PS417_04975 at 1107.448 kb on - strand, within PS417_04975 at 1107.565 kb on + strand, within PS417_04975 at 1107.793 kb on + strand at 1107.793 kb on + strand at 1107.793 kb on + strand at 1107.842 kb on + strand at 1107.843 kb on - strand at 1107.843 kb on - strand at 1107.860 kb on + strand at 1107.861 kb on - strand at 1107.861 kb on - strand at 1107.962 kb on + strand at 1107.963 kb on - strand at 1108.012 kb on - strand at 1108.016 kb on - strand at 1108.063 kb on - strand at 1108.063 kb on - strand at 1108.063 kb on - strand at 1108.063 kb on - strand at 1108.198 kb on + strand, within PS417_04980 at 1108.198 kb on + strand, within PS417_04980 at 1108.198 kb on + strand, within PS417_04980 at 1108.198 kb on + strand, within PS417_04980 at 1108.199 kb on - strand, within PS417_04980 at 1108.199 kb on - strand at 1108.199 kb on - strand, within PS417_04980 at 1108.251 kb on + strand, within PS417_04980 at 1108.252 kb on - strand, within PS417_04980 at 1108.701 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 1,106,276 + PS417_04970 0.53 +0.5 1,106,720 - +1.0 1,106,728 + -1.1 1,106,729 - +0.3 1,106,781 + -0.4 1,106,810 + -0.1 1,106,987 + -0.4 1,106,988 - +0.7 1,106,988 - -0.7 1,107,447 + PS417_04975 0.55 +0.3 1,107,447 + PS417_04975 0.55 -1.9 1,107,448 - PS417_04975 0.55 +1.4 1,107,565 + PS417_04975 0.69 +1.4 1,107,793 + +0.1 1,107,793 + +0.1 1,107,793 + +1.1 1,107,842 + -0.0 1,107,843 - -0.3 1,107,843 - -0.1 1,107,860 + -0.5 1,107,861 - -1.2 1,107,861 - -0.4 1,107,962 + -0.3 1,107,963 - +0.4 1,108,012 - +0.0 1,108,016 - -0.3 1,108,063 - +0.8 1,108,063 - +0.5 1,108,063 - +0.3 1,108,063 - -0.1 1,108,198 + PS417_04980 0.31 -0.2 1,108,198 + PS417_04980 0.31 +0.2 1,108,198 + PS417_04980 0.31 +0.6 1,108,198 + PS417_04980 0.31 +0.3 1,108,199 - PS417_04980 0.31 -0.3 1,108,199 - +0.1 1,108,199 - PS417_04980 0.31 -1.1 1,108,251 + PS417_04980 0.39 -0.5 1,108,252 - PS417_04980 0.39 +1.4 1,108,701 + +0.3
Or see this region's nucleotide sequence