Strain Fitness in Pseudomonas simiae WCS417 around PS417_04975

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_04970 and PS417_04975 are separated by 417 nucleotidesPS417_04975 and PS417_04980 are separated by 181 nucleotidesPS417_04980 and PS417_04985 are separated by 104 nucleotides PS417_04970: PS417_04970 - hypothetical protein, at 1,105,945 to 1,106,574 _04970 PS417_04975: PS417_04975 - response regulator receiver protein, at 1,106,992 to 1,107,819 _04975 PS417_04980: PS417_04980 - response regulator receiver protein, at 1,108,001 to 1,108,636 _04980 PS417_04985: PS417_04985 - ketosteroid isomerase, at 1,108,741 to 1,109,211 _04985 Position (kb) 1106 1107 1108Strain fitness (log2 ratio) -2 -1 0 1at 1106.276 kb on + strand, within PS417_04970at 1106.720 kb on - strandat 1106.728 kb on + strandat 1106.729 kb on - strandat 1106.781 kb on + strandat 1106.810 kb on + strandat 1106.987 kb on + strandat 1106.988 kb on - strandat 1106.988 kb on - strandat 1107.447 kb on + strand, within PS417_04975at 1107.447 kb on + strand, within PS417_04975at 1107.448 kb on - strand, within PS417_04975at 1107.565 kb on + strand, within PS417_04975at 1107.793 kb on + strandat 1107.793 kb on + strandat 1107.793 kb on + strandat 1107.842 kb on + strandat 1107.843 kb on - strandat 1107.843 kb on - strandat 1107.860 kb on + strandat 1107.861 kb on - strandat 1107.861 kb on - strandat 1107.962 kb on + strandat 1107.963 kb on - strandat 1108.012 kb on - strandat 1108.016 kb on - strandat 1108.063 kb on - strandat 1108.063 kb on - strandat 1108.063 kb on - strandat 1108.063 kb on - strandat 1108.198 kb on + strand, within PS417_04980at 1108.198 kb on + strand, within PS417_04980at 1108.198 kb on + strand, within PS417_04980at 1108.198 kb on + strand, within PS417_04980at 1108.199 kb on - strand, within PS417_04980at 1108.199 kb on - strandat 1108.199 kb on - strand, within PS417_04980at 1108.251 kb on + strand, within PS417_04980at 1108.252 kb on - strand, within PS417_04980at 1108.701 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
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1,106,276 + PS417_04970 0.53 +0.5
1,106,720 - +1.0
1,106,728 + -1.1
1,106,729 - +0.3
1,106,781 + -0.4
1,106,810 + -0.1
1,106,987 + -0.4
1,106,988 - +0.7
1,106,988 - -0.7
1,107,447 + PS417_04975 0.55 +0.3
1,107,447 + PS417_04975 0.55 -1.9
1,107,448 - PS417_04975 0.55 +1.4
1,107,565 + PS417_04975 0.69 +1.4
1,107,793 + +0.1
1,107,793 + +0.1
1,107,793 + +1.1
1,107,842 + -0.0
1,107,843 - -0.3
1,107,843 - -0.1
1,107,860 + -0.5
1,107,861 - -1.2
1,107,861 - -0.4
1,107,962 + -0.3
1,107,963 - +0.4
1,108,012 - +0.0
1,108,016 - -0.3
1,108,063 - +0.8
1,108,063 - +0.5
1,108,063 - +0.3
1,108,063 - -0.1
1,108,198 + PS417_04980 0.31 -0.2
1,108,198 + PS417_04980 0.31 +0.2
1,108,198 + PS417_04980 0.31 +0.6
1,108,198 + PS417_04980 0.31 +0.3
1,108,199 - PS417_04980 0.31 -0.3
1,108,199 - +0.1
1,108,199 - PS417_04980 0.31 -1.1
1,108,251 + PS417_04980 0.39 -0.5
1,108,252 - PS417_04980 0.39 +1.4
1,108,701 + +0.3

Or see this region's nucleotide sequence