Strain Fitness in Pseudomonas simiae WCS417 around PS417_27380

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_27370 and PS417_27375 are separated by 235 nucleotidesPS417_27375 and PS417_27380 are separated by 121 nucleotidesPS417_27380 and PS417_27385 are separated by 255 nucleotides PS417_27370: PS417_27370 - transcription termination factor Rho, at 5,906,114 to 5,907,373 _27370 PS417_27375: PS417_27375 - thioredoxin, at 5,907,609 to 5,907,938 _27375 PS417_27380: PS417_27380 - GntR family transcriptional regulator, at 5,908,060 to 5,908,755 _27380 PS417_27385: PS417_27385 - amino acid ABC transporter substrate-binding protein, at 5,909,011 to 5,909,796 _27385 Position (kb) 5908 5909Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5907.376 kb on - strandat 5907.387 kb on - strandat 5907.387 kb on - strandat 5907.387 kb on - strandat 5907.395 kb on - strandat 5907.424 kb on - strandat 5907.533 kb on - strandat 5907.610 kb on + strandat 5907.956 kb on - strandat 5908.052 kb on - strandat 5908.389 kb on + strand, within PS417_27380at 5908.515 kb on + strand, within PS417_27380at 5908.795 kb on - strandat 5908.917 kb on - strandat 5909.023 kb on + strandat 5909.545 kb on + strand, within PS417_27385at 5909.585 kb on + strand, within PS417_27385at 5909.585 kb on + strand, within PS417_27385at 5909.585 kb on + strand, within PS417_27385at 5909.586 kb on - strand, within PS417_27385at 5909.662 kb on + strand, within PS417_27385at 5909.662 kb on + strand, within PS417_27385at 5909.662 kb on + strand, within PS417_27385at 5909.663 kb on - strand, within PS417_27385at 5909.663 kb on - strand, within PS417_27385at 5909.663 kb on - strand, within PS417_27385

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
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5,907,376 - +0.1
5,907,387 - -0.5
5,907,387 - -2.0
5,907,387 - -2.1
5,907,395 - -0.2
5,907,424 - +0.5
5,907,533 - -0.3
5,907,610 + +0.2
5,907,956 - +0.2
5,908,052 - +0.3
5,908,389 + PS417_27380 0.47 +0.4
5,908,515 + PS417_27380 0.65 +0.5
5,908,795 - +1.4
5,908,917 - -0.3
5,909,023 + -0.2
5,909,545 + PS417_27385 0.68 -1.4
5,909,585 + PS417_27385 0.73 -0.7
5,909,585 + PS417_27385 0.73 +1.4
5,909,585 + PS417_27385 0.73 +3.1
5,909,586 - PS417_27385 0.73 -0.5
5,909,662 + PS417_27385 0.83 +0.3
5,909,662 + PS417_27385 0.83 +0.2
5,909,662 + PS417_27385 0.83 +0.3
5,909,663 - PS417_27385 0.83 +0.2
5,909,663 - PS417_27385 0.83 -0.5
5,909,663 - PS417_27385 0.83 +0.0

Or see this region's nucleotide sequence