Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27370 and PS417_27375 are separated by 235 nucleotides PS417_27375 and PS417_27380 are separated by 121 nucleotides PS417_27380 and PS417_27385 are separated by 255 nucleotides
PS417_27370: PS417_27370 - transcription termination factor Rho, at 5,906,114 to 5,907,373
_27370
PS417_27375: PS417_27375 - thioredoxin, at 5,907,609 to 5,907,938
_27375
PS417_27380: PS417_27380 - GntR family transcriptional regulator, at 5,908,060 to 5,908,755
_27380
PS417_27385: PS417_27385 - amino acid ABC transporter substrate-binding protein, at 5,909,011 to 5,909,796
_27385
Position (kb)
5908
5909 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 5907.376 kb on - strand at 5907.387 kb on - strand at 5907.387 kb on - strand at 5907.387 kb on - strand at 5907.395 kb on - strand at 5907.424 kb on - strand at 5907.533 kb on - strand at 5907.610 kb on + strand at 5907.956 kb on - strand at 5908.052 kb on - strand at 5908.389 kb on + strand, within PS417_27380 at 5908.515 kb on + strand, within PS417_27380 at 5908.795 kb on - strand at 5908.917 kb on - strand at 5909.023 kb on + strand at 5909.545 kb on + strand, within PS417_27385 at 5909.585 kb on + strand, within PS417_27385 at 5909.585 kb on + strand, within PS417_27385 at 5909.585 kb on + strand, within PS417_27385 at 5909.586 kb on - strand, within PS417_27385 at 5909.662 kb on + strand, within PS417_27385 at 5909.662 kb on + strand, within PS417_27385 at 5909.662 kb on + strand, within PS417_27385 at 5909.663 kb on - strand, within PS417_27385 at 5909.663 kb on - strand, within PS417_27385 at 5909.663 kb on - strand, within PS417_27385
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 5,907,376 - +0.1 5,907,387 - -0.5 5,907,387 - -2.0 5,907,387 - -2.1 5,907,395 - -0.2 5,907,424 - +0.5 5,907,533 - -0.3 5,907,610 + +0.2 5,907,956 - +0.2 5,908,052 - +0.3 5,908,389 + PS417_27380 0.47 +0.4 5,908,515 + PS417_27380 0.65 +0.5 5,908,795 - +1.4 5,908,917 - -0.3 5,909,023 + -0.2 5,909,545 + PS417_27385 0.68 -1.4 5,909,585 + PS417_27385 0.73 -0.7 5,909,585 + PS417_27385 0.73 +1.4 5,909,585 + PS417_27385 0.73 +3.1 5,909,586 - PS417_27385 0.73 -0.5 5,909,662 + PS417_27385 0.83 +0.3 5,909,662 + PS417_27385 0.83 +0.2 5,909,662 + PS417_27385 0.83 +0.3 5,909,663 - PS417_27385 0.83 +0.2 5,909,663 - PS417_27385 0.83 -0.5 5,909,663 - PS417_27385 0.83 +0.0
Or see this region's nucleotide sequence