Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23590 and PS417_23595 are separated by 29 nucleotides PS417_23595 and PS417_23600 are separated by 1 nucleotides PS417_23600 and PS417_23605 are separated by 12 nucleotides
PS417_23590: PS417_23590 - bleomycin resistance protein, at 5,102,232 to 5,102,600
_23590
PS417_23595: PS417_23595 - D-aminoacylase, at 5,102,630 to 5,104,093
_23595
PS417_23600: PS417_23600 - RpiR family transcriptional regulator, at 5,104,095 to 5,104,955
_23600
PS417_23605: PS417_23605 - permease DsdX, at 5,104,968 to 5,106,371
_23605
Position (kb) 5102
5103
5104
5105 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5101.725 kb on + strand at 5101.725 kb on + strand at 5101.726 kb on - strand at 5101.726 kb on - strand at 5101.726 kb on - strand at 5101.741 kb on - strand at 5101.741 kb on - strand at 5101.746 kb on + strand at 5101.747 kb on - strand at 5101.772 kb on + strand at 5101.875 kb on + strand at 5101.878 kb on + strand at 5101.925 kb on + strand at 5101.926 kb on - strand at 5101.928 kb on + strand at 5101.928 kb on + strand at 5101.929 kb on - strand at 5102.033 kb on + strand at 5102.053 kb on + strand at 5102.473 kb on + strand, within PS417_23590 at 5102.474 kb on - strand, within PS417_23590 at 5102.474 kb on - strand, within PS417_23590 at 5102.536 kb on + strand, within PS417_23590 at 5102.633 kb on + strand at 5102.633 kb on + strand at 5102.634 kb on - strand at 5102.634 kb on - strand at 5102.715 kb on + strand at 5102.716 kb on - strand at 5102.750 kb on - strand at 5102.750 kb on - strand at 5103.076 kb on - strand, within PS417_23595 at 5103.095 kb on + strand, within PS417_23595 at 5103.252 kb on + strand, within PS417_23595 at 5103.322 kb on + strand, within PS417_23595 at 5103.364 kb on + strand, within PS417_23595 at 5103.456 kb on + strand, within PS417_23595 at 5103.457 kb on - strand, within PS417_23595 at 5103.640 kb on + strand, within PS417_23595 at 5103.641 kb on - strand, within PS417_23595 at 5103.641 kb on - strand, within PS417_23595 at 5103.662 kb on - strand, within PS417_23595 at 5104.029 kb on - strand at 5104.032 kb on + strand at 5104.032 kb on + strand at 5104.032 kb on + strand at 5104.032 kb on + strand at 5104.032 kb on + strand at 5104.086 kb on + strand at 5104.087 kb on - strand at 5104.093 kb on + strand at 5104.257 kb on - strand, within PS417_23600 at 5104.258 kb on + strand, within PS417_23600 at 5104.258 kb on + strand at 5104.258 kb on + strand, within PS417_23600 at 5104.258 kb on + strand, within PS417_23600 at 5104.258 kb on + strand, within PS417_23600 at 5104.258 kb on + strand, within PS417_23600 at 5104.259 kb on - strand, within PS417_23600 at 5104.259 kb on - strand, within PS417_23600 at 5104.259 kb on - strand, within PS417_23600 at 5104.259 kb on - strand, within PS417_23600 at 5104.262 kb on + strand, within PS417_23600 at 5104.358 kb on - strand, within PS417_23600 at 5104.398 kb on - strand, within PS417_23600 at 5104.991 kb on - strand at 5105.066 kb on + strand at 5105.067 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 5,101,725 + -0.1 5,101,725 + -0.3 5,101,726 - +0.3 5,101,726 - -0.8 5,101,726 - -0.4 5,101,741 - -1.1 5,101,741 - +0.0 5,101,746 + +0.2 5,101,747 - +0.1 5,101,772 + -0.3 5,101,875 + -1.7 5,101,878 + +1.0 5,101,925 + -0.5 5,101,926 - +1.0 5,101,928 + +0.4 5,101,928 + +0.4 5,101,929 - +1.2 5,102,033 + +0.2 5,102,053 + +0.0 5,102,473 + PS417_23590 0.65 -0.3 5,102,474 - PS417_23590 0.66 -0.7 5,102,474 - PS417_23590 0.66 +0.4 5,102,536 + PS417_23590 0.82 -0.1 5,102,633 + -0.5 5,102,633 + -0.5 5,102,634 - +1.6 5,102,634 - -0.1 5,102,715 + +0.0 5,102,716 - -0.7 5,102,750 - +0.4 5,102,750 - +0.3 5,103,076 - PS417_23595 0.30 +1.8 5,103,095 + PS417_23595 0.32 +0.3 5,103,252 + PS417_23595 0.42 -0.1 5,103,322 + PS417_23595 0.47 +0.5 5,103,364 + PS417_23595 0.50 -0.2 5,103,456 + PS417_23595 0.56 +1.2 5,103,457 - PS417_23595 0.56 +0.8 5,103,640 + PS417_23595 0.69 +2.2 5,103,641 - PS417_23595 0.69 +0.5 5,103,641 - PS417_23595 0.69 -0.0 5,103,662 - PS417_23595 0.70 -0.3 5,104,029 - +0.2 5,104,032 + -2.0 5,104,032 + -0.1 5,104,032 + -1.1 5,104,032 + -0.3 5,104,032 + +0.1 5,104,086 + -1.7 5,104,087 - -0.8 5,104,093 + -0.1 5,104,257 - PS417_23600 0.19 -1.4 5,104,258 + PS417_23600 0.19 +1.2 5,104,258 + +1.9 5,104,258 + PS417_23600 0.19 -1.3 5,104,258 + PS417_23600 0.19 +1.1 5,104,258 + PS417_23600 0.19 -0.3 5,104,258 + PS417_23600 0.19 +0.1 5,104,259 - PS417_23600 0.19 -0.4 5,104,259 - PS417_23600 0.19 +0.8 5,104,259 - PS417_23600 0.19 -0.1 5,104,259 - PS417_23600 0.19 +0.3 5,104,262 + PS417_23600 0.19 +0.1 5,104,358 - PS417_23600 0.31 +0.3 5,104,398 - PS417_23600 0.35 -1.0 5,104,991 - -0.2 5,105,066 + +0.3 5,105,067 - +0.5
Or see this region's nucleotide sequence