Strain Fitness in Pseudomonas simiae WCS417 around PS417_20975

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_20970 and PS417_20975 overlap by 1 nucleotidesPS417_20975 and PS417_20980 are separated by 26 nucleotidesPS417_20980 and PS417_20985 are separated by 60 nucleotides PS417_20970: PS417_20970 - MFS transporter, at 4,561,728 to 4,562,939 _20970 PS417_20975: PS417_20975 - protein kinase, at 4,562,939 to 4,564,609 _20975 PS417_20980: PS417_20980 - uroporphyrin-III methyltransferase, at 4,564,636 to 4,565,379 _20980 PS417_20985: PS417_20985 - porin, at 4,565,440 to 4,566,420 _20985 Position (kb) 4562 4563 4564 4565Strain fitness (log2 ratio) -2 -1 0 1 2at 4562.031 kb on + strand, within PS417_20970at 4562.032 kb on - strand, within PS417_20970at 4562.116 kb on - strand, within PS417_20970at 4562.388 kb on - strand, within PS417_20970at 4562.430 kb on + strand, within PS417_20970at 4562.475 kb on + strand, within PS417_20970at 4562.476 kb on - strand, within PS417_20970at 4562.476 kb on - strand, within PS417_20970at 4562.556 kb on - strand, within PS417_20970at 4562.571 kb on + strand, within PS417_20970at 4562.571 kb on + strand, within PS417_20970at 4562.572 kb on - strand, within PS417_20970at 4562.572 kb on - strandat 4562.572 kb on - strand, within PS417_20970at 4562.817 kb on + strand, within PS417_20970at 4562.818 kb on - strandat 4563.050 kb on + strandat 4563.051 kb on - strandat 4563.051 kb on - strandat 4563.054 kb on + strandat 4563.054 kb on + strandat 4563.055 kb on - strandat 4563.055 kb on - strandat 4563.055 kb on - strandat 4563.055 kb on - strandat 4563.055 kb on - strandat 4563.137 kb on + strand, within PS417_20975at 4563.140 kb on + strand, within PS417_20975at 4563.140 kb on + strand, within PS417_20975at 4563.141 kb on - strand, within PS417_20975at 4563.189 kb on + strand, within PS417_20975at 4563.189 kb on + strand, within PS417_20975at 4563.190 kb on - strand, within PS417_20975at 4563.281 kb on - strand, within PS417_20975at 4563.311 kb on + strand, within PS417_20975at 4563.334 kb on - strand, within PS417_20975at 4563.334 kb on - strand, within PS417_20975at 4563.509 kb on - strand, within PS417_20975at 4563.736 kb on - strand, within PS417_20975at 4563.765 kb on - strand, within PS417_20975at 4563.852 kb on + strand, within PS417_20975at 4563.935 kb on + strand, within PS417_20975at 4563.935 kb on + strand, within PS417_20975at 4563.935 kb on + strand, within PS417_20975at 4563.935 kb on + strand, within PS417_20975at 4563.936 kb on - strand, within PS417_20975at 4563.938 kb on + strand, within PS417_20975at 4563.938 kb on + strand, within PS417_20975at 4563.938 kb on + strand, within PS417_20975at 4563.938 kb on + strandat 4564.151 kb on + strand, within PS417_20975at 4564.202 kb on - strand, within PS417_20975at 4564.208 kb on - strandat 4564.208 kb on - strand, within PS417_20975at 4564.257 kb on + strand, within PS417_20975at 4564.257 kb on + strand, within PS417_20975at 4564.258 kb on - strand, within PS417_20975at 4564.258 kb on - strand, within PS417_20975at 4564.258 kb on - strand, within PS417_20975at 4564.258 kb on - strand, within PS417_20975at 4564.258 kb on - strand, within PS417_20975at 4564.258 kb on - strand, within PS417_20975at 4564.258 kb on - strand, within PS417_20975at 4564.258 kb on - strand, within PS417_20975at 4564.258 kb on - strand, within PS417_20975at 4564.259 kb on + strand, within PS417_20975at 4564.259 kb on + strand, within PS417_20975at 4564.260 kb on - strand, within PS417_20975at 4564.260 kb on - strand, within PS417_20975at 4564.260 kb on - strand, within PS417_20975at 4564.280 kb on + strand, within PS417_20975at 4564.280 kb on + strand, within PS417_20975at 4564.281 kb on - strand, within PS417_20975at 4564.281 kb on - strand, within PS417_20975at 4564.281 kb on - strand, within PS417_20975at 4564.281 kb on - strand, within PS417_20975at 4564.281 kb on - strand, within PS417_20975at 4564.283 kb on + strand, within PS417_20975at 4564.283 kb on + strand, within PS417_20975at 4564.284 kb on - strand, within PS417_20975at 4564.589 kb on + strandat 4564.635 kb on + strandat 4564.636 kb on - strandat 4564.859 kb on - strand, within PS417_20980at 4564.860 kb on + strand, within PS417_20980at 4564.860 kb on + strand, within PS417_20980at 4565.134 kb on + strand, within PS417_20980at 4565.134 kb on + strand, within PS417_20980at 4565.134 kb on + strand, within PS417_20980at 4565.135 kb on - strand, within PS417_20980at 4565.135 kb on - strand, within PS417_20980at 4565.199 kb on + strand, within PS417_20980at 4565.268 kb on + strand, within PS417_20980at 4565.535 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
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4,562,031 + PS417_20970 0.25 -0.0
4,562,032 - PS417_20970 0.25 +0.7
4,562,116 - PS417_20970 0.32 +0.6
4,562,388 - PS417_20970 0.54 +0.8
4,562,430 + PS417_20970 0.58 +1.0
4,562,475 + PS417_20970 0.62 +0.9
4,562,476 - PS417_20970 0.62 +0.6
4,562,476 - PS417_20970 0.62 +0.4
4,562,556 - PS417_20970 0.68 +0.4
4,562,571 + PS417_20970 0.70 -0.0
4,562,571 + PS417_20970 0.70 +0.4
4,562,572 - PS417_20970 0.70 +1.1
4,562,572 - -1.0
4,562,572 - PS417_20970 0.70 +1.0
4,562,817 + PS417_20970 0.90 +0.4
4,562,818 - +0.8
4,563,050 + -0.3
4,563,051 - +0.6
4,563,051 - -0.1
4,563,054 + -0.1
4,563,054 + -0.4
4,563,055 - +0.0
4,563,055 - -0.4
4,563,055 - -1.3
4,563,055 - +0.8
4,563,055 - -0.4
4,563,137 + PS417_20975 0.12 -0.4
4,563,140 + PS417_20975 0.12 -0.5
4,563,140 + PS417_20975 0.12 +0.7
4,563,141 - PS417_20975 0.12 +0.1
4,563,189 + PS417_20975 0.15 +0.5
4,563,189 + PS417_20975 0.15 +0.7
4,563,190 - PS417_20975 0.15 +0.6
4,563,281 - PS417_20975 0.20 +0.1
4,563,311 + PS417_20975 0.22 -0.8
4,563,334 - PS417_20975 0.24 -0.2
4,563,334 - PS417_20975 0.24 -1.3
4,563,509 - PS417_20975 0.34 +0.7
4,563,736 - PS417_20975 0.48 +0.1
4,563,765 - PS417_20975 0.49 -0.8
4,563,852 + PS417_20975 0.55 -0.7
4,563,935 + PS417_20975 0.60 +1.4
4,563,935 + PS417_20975 0.60 -1.1
4,563,935 + PS417_20975 0.60 -1.2
4,563,935 + PS417_20975 0.60 +0.0
4,563,936 - PS417_20975 0.60 -0.6
4,563,938 + PS417_20975 0.60 -0.4
4,563,938 + PS417_20975 0.60 -1.4
4,563,938 + PS417_20975 0.60 -0.3
4,563,938 + +0.4
4,564,151 + PS417_20975 0.73 -0.8
4,564,202 - PS417_20975 0.76 -0.8
4,564,208 - -1.2
4,564,208 - PS417_20975 0.76 -1.1
4,564,257 + PS417_20975 0.79 -0.9
4,564,257 + PS417_20975 0.79 -0.9
4,564,258 - PS417_20975 0.79 -1.5
4,564,258 - PS417_20975 0.79 +0.6
4,564,258 - PS417_20975 0.79 -1.2
4,564,258 - PS417_20975 0.79 -0.2
4,564,258 - PS417_20975 0.79 -1.0
4,564,258 - PS417_20975 0.79 +0.0
4,564,258 - PS417_20975 0.79 -0.3
4,564,258 - PS417_20975 0.79 -0.2
4,564,258 - PS417_20975 0.79 -0.1
4,564,259 + PS417_20975 0.79 -1.1
4,564,259 + PS417_20975 0.79 -0.4
4,564,260 - PS417_20975 0.79 -0.7
4,564,260 - PS417_20975 0.79 -1.7
4,564,260 - PS417_20975 0.79 -1.6
4,564,280 + PS417_20975 0.80 -2.2
4,564,280 + PS417_20975 0.80 -0.0
4,564,281 - PS417_20975 0.80 -2.0
4,564,281 - PS417_20975 0.80 +0.1
4,564,281 - PS417_20975 0.80 +0.5
4,564,281 - PS417_20975 0.80 +0.3
4,564,281 - PS417_20975 0.80 -0.5
4,564,283 + PS417_20975 0.80 +0.5
4,564,283 + PS417_20975 0.80 -0.6
4,564,284 - PS417_20975 0.80 -0.4
4,564,589 + +0.5
4,564,635 + +0.1
4,564,636 - +1.8
4,564,859 - PS417_20980 0.30 +0.1
4,564,860 + PS417_20980 0.30 -0.2
4,564,860 + PS417_20980 0.30 -0.2
4,565,134 + PS417_20980 0.67 +1.7
4,565,134 + PS417_20980 0.67 -0.1
4,565,134 + PS417_20980 0.67 +0.0
4,565,135 - PS417_20980 0.67 +0.3
4,565,135 - PS417_20980 0.67 -0.3
4,565,199 + PS417_20980 0.76 +0.2
4,565,268 + PS417_20980 0.85 -0.1
4,565,535 - -1.6

Or see this region's nucleotide sequence