Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19545 and PS417_19550 are separated by 53 nucleotides PS417_19550 and PS417_19555 are separated by 302 nucleotides PS417_19555 and PS417_19560 are separated by 42 nucleotides
PS417_19545: PS417_19545 - peptide synthase, at 4,239,501 to 4,252,382
_19545
PS417_19550: PS417_19550 - thioesterase, at 4,252,436 to 4,253,188
_19550
PS417_19555: PS417_19555 - RNA polymerase sigma70, at 4,253,491 to 4,254,042
_19555
PS417_19560: PS417_19560 - amino acid ABC transporter substrate-binding protein, at 4,254,085 to 4,254,873
_19560
Position (kb)
4252
4253
4254 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4251.670 kb on + strand at 4251.887 kb on - strand at 4251.887 kb on - strand at 4251.887 kb on - strand at 4252.154 kb on - strand at 4252.535 kb on + strand, within PS417_19550 at 4252.535 kb on + strand, within PS417_19550 at 4252.536 kb on - strand, within PS417_19550 at 4252.830 kb on + strand, within PS417_19550 at 4252.831 kb on - strand, within PS417_19550 at 4252.968 kb on + strand, within PS417_19550 at 4253.084 kb on + strand, within PS417_19550 at 4253.084 kb on + strand, within PS417_19550 at 4253.219 kb on + strand at 4253.219 kb on + strand at 4253.219 kb on + strand at 4253.220 kb on - strand at 4253.220 kb on - strand at 4253.220 kb on - strand at 4253.220 kb on - strand at 4253.220 kb on - strand at 4253.220 kb on - strand at 4253.220 kb on - strand at 4253.319 kb on - strand at 4253.357 kb on + strand at 4253.357 kb on + strand at 4253.435 kb on - strand at 4253.435 kb on - strand at 4253.504 kb on + strand at 4253.504 kb on + strand at 4253.505 kb on - strand at 4253.583 kb on + strand, within PS417_19555 at 4253.584 kb on - strand, within PS417_19555 at 4253.616 kb on - strand, within PS417_19555 at 4253.616 kb on - strand, within PS417_19555 at 4253.686 kb on + strand, within PS417_19555 at 4253.686 kb on + strand, within PS417_19555 at 4253.896 kb on + strand, within PS417_19555 at 4254.022 kb on - strand at 4254.033 kb on + strand at 4254.033 kb on + strand at 4254.053 kb on + strand at 4254.054 kb on - strand at 4254.054 kb on - strand at 4254.113 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 4,251,670 + +1.5 4,251,887 - +0.2 4,251,887 - +0.4 4,251,887 - -0.6 4,252,154 - +0.3 4,252,535 + PS417_19550 0.13 +1.9 4,252,535 + PS417_19550 0.13 +0.9 4,252,536 - PS417_19550 0.13 -1.3 4,252,830 + PS417_19550 0.52 +0.9 4,252,831 - PS417_19550 0.52 +0.1 4,252,968 + PS417_19550 0.71 +0.2 4,253,084 + PS417_19550 0.86 +0.4 4,253,084 + PS417_19550 0.86 +0.7 4,253,219 + +0.3 4,253,219 + +0.6 4,253,219 + -0.5 4,253,220 - -0.4 4,253,220 - +1.1 4,253,220 - +0.2 4,253,220 - +0.8 4,253,220 - -0.1 4,253,220 - +1.1 4,253,220 - -0.2 4,253,319 - -0.4 4,253,357 + +1.5 4,253,357 + +0.1 4,253,435 - +0.5 4,253,435 - +0.7 4,253,504 + +0.9 4,253,504 + +0.9 4,253,505 - +0.7 4,253,583 + PS417_19555 0.17 -0.1 4,253,584 - PS417_19555 0.17 +0.4 4,253,616 - PS417_19555 0.23 +0.6 4,253,616 - PS417_19555 0.23 -0.0 4,253,686 + PS417_19555 0.35 -1.8 4,253,686 + PS417_19555 0.35 -0.3 4,253,896 + PS417_19555 0.73 -0.2 4,254,022 - -0.7 4,254,033 + -0.5 4,254,033 + -0.9 4,254,053 + +1.2 4,254,054 - +0.4 4,254,054 - -0.9 4,254,113 + -0.1
Or see this region's nucleotide sequence