Strain Fitness in Pseudomonas simiae WCS417 around PS417_19550

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_19545 and PS417_19550 are separated by 53 nucleotidesPS417_19550 and PS417_19555 are separated by 302 nucleotidesPS417_19555 and PS417_19560 are separated by 42 nucleotides PS417_19545: PS417_19545 - peptide synthase, at 4,239,501 to 4,252,382 _19545 PS417_19550: PS417_19550 - thioesterase, at 4,252,436 to 4,253,188 _19550 PS417_19555: PS417_19555 - RNA polymerase sigma70, at 4,253,491 to 4,254,042 _19555 PS417_19560: PS417_19560 - amino acid ABC transporter substrate-binding protein, at 4,254,085 to 4,254,873 _19560 Position (kb) 4252 4253 4254Strain fitness (log2 ratio) -2 -1 0 1 2at 4251.670 kb on + strandat 4251.887 kb on - strandat 4251.887 kb on - strandat 4251.887 kb on - strandat 4252.154 kb on - strandat 4252.535 kb on + strand, within PS417_19550at 4252.535 kb on + strand, within PS417_19550at 4252.536 kb on - strand, within PS417_19550at 4252.830 kb on + strand, within PS417_19550at 4252.831 kb on - strand, within PS417_19550at 4252.968 kb on + strand, within PS417_19550at 4253.084 kb on + strand, within PS417_19550at 4253.084 kb on + strand, within PS417_19550at 4253.219 kb on + strandat 4253.219 kb on + strandat 4253.219 kb on + strandat 4253.220 kb on - strandat 4253.220 kb on - strandat 4253.220 kb on - strandat 4253.220 kb on - strandat 4253.220 kb on - strandat 4253.220 kb on - strandat 4253.220 kb on - strandat 4253.319 kb on - strandat 4253.357 kb on + strandat 4253.357 kb on + strandat 4253.435 kb on - strandat 4253.435 kb on - strandat 4253.504 kb on + strandat 4253.504 kb on + strandat 4253.505 kb on - strandat 4253.583 kb on + strand, within PS417_19555at 4253.584 kb on - strand, within PS417_19555at 4253.616 kb on - strand, within PS417_19555at 4253.616 kb on - strand, within PS417_19555at 4253.686 kb on + strand, within PS417_19555at 4253.686 kb on + strand, within PS417_19555at 4253.896 kb on + strand, within PS417_19555at 4254.022 kb on - strandat 4254.033 kb on + strandat 4254.033 kb on + strandat 4254.053 kb on + strandat 4254.054 kb on - strandat 4254.054 kb on - strandat 4254.113 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
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4,251,670 + +1.5
4,251,887 - +0.2
4,251,887 - +0.4
4,251,887 - -0.6
4,252,154 - +0.3
4,252,535 + PS417_19550 0.13 +1.9
4,252,535 + PS417_19550 0.13 +0.9
4,252,536 - PS417_19550 0.13 -1.3
4,252,830 + PS417_19550 0.52 +0.9
4,252,831 - PS417_19550 0.52 +0.1
4,252,968 + PS417_19550 0.71 +0.2
4,253,084 + PS417_19550 0.86 +0.4
4,253,084 + PS417_19550 0.86 +0.7
4,253,219 + +0.3
4,253,219 + +0.6
4,253,219 + -0.5
4,253,220 - -0.4
4,253,220 - +1.1
4,253,220 - +0.2
4,253,220 - +0.8
4,253,220 - -0.1
4,253,220 - +1.1
4,253,220 - -0.2
4,253,319 - -0.4
4,253,357 + +1.5
4,253,357 + +0.1
4,253,435 - +0.5
4,253,435 - +0.7
4,253,504 + +0.9
4,253,504 + +0.9
4,253,505 - +0.7
4,253,583 + PS417_19555 0.17 -0.1
4,253,584 - PS417_19555 0.17 +0.4
4,253,616 - PS417_19555 0.23 +0.6
4,253,616 - PS417_19555 0.23 -0.0
4,253,686 + PS417_19555 0.35 -1.8
4,253,686 + PS417_19555 0.35 -0.3
4,253,896 + PS417_19555 0.73 -0.2
4,254,022 - -0.7
4,254,033 + -0.5
4,254,033 + -0.9
4,254,053 + +1.2
4,254,054 - +0.4
4,254,054 - -0.9
4,254,113 + -0.1

Or see this region's nucleotide sequence