Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_16245 and PS417_16250 overlap by 4 nucleotides PS417_16250 and PS417_16255 overlap by 4 nucleotides PS417_16255 and PS417_16260 are separated by 76 nucleotides
PS417_16245: PS417_16245 - Fis family transcriptional regulator, at 3,559,737 to 3,561,554
_16245
PS417_16250: PS417_16250 - iron dicitrate transport regulator FecR, at 3,561,551 to 3,562,483
_16250
PS417_16255: PS417_16255 - RNA polymerase sigma factor, at 3,562,480 to 3,563,022
_16255
PS417_16260: PS417_16260 - TonB-dependent receptor, at 3,563,099 to 3,565,216
_16260
Position (kb)
3562
3563
3564 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3561.525 kb on + strand at 3562.541 kb on + strand, within PS417_16255 at 3562.541 kb on + strand, within PS417_16255 at 3562.541 kb on + strand, within PS417_16255 at 3562.593 kb on - strand, within PS417_16255 at 3563.075 kb on + strand at 3563.075 kb on + strand at 3563.127 kb on + strand at 3563.176 kb on + strand at 3563.298 kb on + strand at 3563.299 kb on - strand at 3563.310 kb on + strand at 3563.313 kb on + strand, within PS417_16260 at 3563.313 kb on + strand, within PS417_16260 at 3563.313 kb on + strand, within PS417_16260 at 3563.410 kb on - strand, within PS417_16260 at 3563.412 kb on + strand, within PS417_16260 at 3563.413 kb on - strand, within PS417_16260 at 3563.413 kb on - strand, within PS417_16260 at 3563.487 kb on + strand, within PS417_16260 at 3563.488 kb on - strand, within PS417_16260 at 3563.668 kb on - strand, within PS417_16260 at 3564.014 kb on + strand at 3564.014 kb on + strand, within PS417_16260 at 3564.014 kb on + strand, within PS417_16260
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 3,561,525 + +0.4 3,562,541 + PS417_16255 0.11 -0.3 3,562,541 + PS417_16255 0.11 +2.3 3,562,541 + PS417_16255 0.11 -0.0 3,562,593 - PS417_16255 0.21 +0.8 3,563,075 + +0.4 3,563,075 + -0.3 3,563,127 + -0.7 3,563,176 + -0.2 3,563,298 + -0.5 3,563,299 - -0.0 3,563,310 + +1.7 3,563,313 + PS417_16260 0.10 +0.6 3,563,313 + PS417_16260 0.10 +0.0 3,563,313 + PS417_16260 0.10 +0.0 3,563,410 - PS417_16260 0.15 -2.0 3,563,412 + PS417_16260 0.15 +0.0 3,563,413 - PS417_16260 0.15 +1.4 3,563,413 - PS417_16260 0.15 -1.4 3,563,487 + PS417_16260 0.18 -0.7 3,563,488 - PS417_16260 0.18 -0.8 3,563,668 - PS417_16260 0.27 +0.1 3,564,014 + -1.6 3,564,014 + PS417_16260 0.43 +0.2 3,564,014 + PS417_16260 0.43 -0.7
Or see this region's nucleotide sequence