Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_12155 and PS417_12160 are separated by 285 nucleotides PS417_12160 and PS417_12165 are separated by 30 nucleotides
PS417_12155: PS417_12155 - transporter, at 2,638,660 to 2,640,051
_12155
PS417_12160: PS417_12160 - Fis family transcriptional regulator, at 2,640,337 to 2,641,746
_12160
PS417_12165: PS417_12165 - microcin ABC transporter ATP-binding protein, at 2,641,777 to 2,643,348
_12165
Position (kb)
2640
2641
2642 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2639.647 kb on - strand, within PS417_12155 at 2639.721 kb on - strand, within PS417_12155 at 2639.721 kb on - strand, within PS417_12155 at 2639.753 kb on - strand at 2639.753 kb on - strand, within PS417_12155 at 2639.857 kb on + strand, within PS417_12155 at 2639.867 kb on + strand, within PS417_12155 at 2639.989 kb on - strand at 2639.989 kb on - strand at 2639.991 kb on - strand at 2640.246 kb on + strand at 2640.278 kb on + strand at 2640.319 kb on - strand at 2640.319 kb on - strand at 2640.797 kb on + strand, within PS417_12160 at 2640.797 kb on + strand, within PS417_12160 at 2640.797 kb on + strand, within PS417_12160 at 2640.868 kb on + strand, within PS417_12160 at 2641.289 kb on + strand, within PS417_12160 at 2641.290 kb on - strand, within PS417_12160 at 2641.290 kb on - strand, within PS417_12160 at 2641.746 kb on + strand at 2641.751 kb on - strand at 2641.817 kb on + strand at 2641.943 kb on + strand, within PS417_12165 at 2641.943 kb on + strand, within PS417_12165 at 2641.943 kb on + strand, within PS417_12165 at 2641.944 kb on - strand, within PS417_12165 at 2641.944 kb on - strand, within PS417_12165 at 2641.955 kb on + strand, within PS417_12165
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 2,639,647 - PS417_12155 0.71 +0.8 2,639,721 - PS417_12155 0.76 -0.4 2,639,721 - PS417_12155 0.76 +0.3 2,639,753 - +0.8 2,639,753 - PS417_12155 0.79 -1.2 2,639,857 + PS417_12155 0.86 +0.9 2,639,867 + PS417_12155 0.87 -0.2 2,639,989 - +2.6 2,639,989 - -2.1 2,639,991 - -1.0 2,640,246 + -1.0 2,640,278 + +0.1 2,640,319 - -0.1 2,640,319 - -0.4 2,640,797 + PS417_12160 0.33 -0.0 2,640,797 + PS417_12160 0.33 +1.6 2,640,797 + PS417_12160 0.33 -0.6 2,640,868 + PS417_12160 0.38 +1.4 2,641,289 + PS417_12160 0.68 +1.0 2,641,290 - PS417_12160 0.68 -0.7 2,641,290 - PS417_12160 0.68 -0.7 2,641,746 + +1.2 2,641,751 - -1.2 2,641,817 + -0.1 2,641,943 + PS417_12165 0.11 -1.2 2,641,943 + PS417_12165 0.11 +0.1 2,641,943 + PS417_12165 0.11 -0.2 2,641,944 - PS417_12165 0.11 -0.4 2,641,944 - PS417_12165 0.11 -0.1 2,641,955 + PS417_12165 0.11 +1.3
Or see this region's nucleotide sequence