Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_11900 and PS417_11905 are separated by 180 nucleotides PS417_11905 and PS417_11910 are separated by 115 nucleotides PS417_11910 and PS417_11915 are separated by 6 nucleotides PS417_11915 and PS417_11920 are separated by 68 nucleotides PS417_11920 and PS417_11925 are separated by 138 nucleotides
PS417_11900: PS417_11900 - conjugal transfer protein TraR, at 2,592,251 to 2,592,655
_11900
PS417_11905: PS417_11905 - chemotaxis protein, at 2,592,836 to 2,594,431
_11905
PS417_11910: PS417_11910 - hypothetical protein, at 2,594,547 to 2,594,750
_11910
PS417_11915: PS417_11915 - hypothetical protein, at 2,594,757 to 2,594,993
_11915
PS417_11920: PS417_11920 - hypothetical protein, at 2,595,062 to 2,595,292
_11920
PS417_11925: PS417_11925 - hypothetical protein, at 2,595,431 to 2,595,634
_11925
Position (kb)
2592
2593
2594
2595 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2591.889 kb on - strand at 2591.889 kb on - strand at 2591.914 kb on - strand at 2591.984 kb on + strand at 2591.984 kb on + strand at 2591.984 kb on + strand at 2591.985 kb on - strand at 2591.985 kb on - strand at 2591.985 kb on - strand at 2591.985 kb on - strand at 2591.985 kb on - strand at 2591.985 kb on - strand at 2591.985 kb on - strand at 2591.985 kb on - strand at 2591.985 kb on - strand at 2591.986 kb on + strand at 2591.987 kb on - strand at 2591.987 kb on - strand at 2591.988 kb on + strand at 2591.988 kb on + strand at 2591.989 kb on - strand at 2591.989 kb on - strand at 2591.989 kb on - strand at 2591.989 kb on - strand at 2591.989 kb on - strand at 2591.989 kb on - strand at 2592.015 kb on - strand at 2592.017 kb on - strand at 2592.121 kb on - strand at 2592.290 kb on + strand at 2592.290 kb on + strand at 2592.290 kb on + strand at 2592.290 kb on + strand at 2592.291 kb on - strand at 2592.291 kb on - strand at 2592.291 kb on - strand at 2592.442 kb on + strand, within PS417_11900 at 2592.511 kb on + strand, within PS417_11900 at 2592.512 kb on - strand, within PS417_11900 at 2592.596 kb on + strand, within PS417_11900 at 2592.597 kb on - strand, within PS417_11900 at 2592.741 kb on - strand at 2592.775 kb on + strand at 2592.775 kb on + strand at 2592.960 kb on - strand at 2593.079 kb on + strand, within PS417_11905 at 2593.079 kb on + strand, within PS417_11905 at 2593.080 kb on - strand, within PS417_11905 at 2593.198 kb on - strand, within PS417_11905 at 2593.653 kb on + strand, within PS417_11905 at 2593.922 kb on + strand, within PS417_11905 at 2593.922 kb on + strand, within PS417_11905 at 2593.922 kb on + strand, within PS417_11905 at 2593.923 kb on - strand, within PS417_11905 at 2593.923 kb on - strand, within PS417_11905 at 2593.923 kb on - strand, within PS417_11905 at 2593.923 kb on - strand, within PS417_11905 at 2594.021 kb on + strand, within PS417_11905 at 2594.021 kb on + strand, within PS417_11905 at 2594.054 kb on + strand, within PS417_11905 at 2594.055 kb on - strand, within PS417_11905 at 2594.165 kb on + strand, within PS417_11905 at 2594.166 kb on - strand, within PS417_11905 at 2594.312 kb on + strand at 2594.312 kb on + strand at 2594.313 kb on - strand at 2594.313 kb on - strand at 2594.313 kb on - strand at 2594.399 kb on + strand at 2594.400 kb on - strand at 2594.400 kb on - strand at 2594.459 kb on + strand at 2594.528 kb on - strand at 2594.759 kb on - strand at 2595.061 kb on - strand at 2595.294 kb on + strand at 2595.314 kb on - strand at 2595.400 kb on + strand at 2595.400 kb on + strand at 2595.401 kb on - strand at 2595.401 kb on - strand at 2595.406 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 2,591,889 - +0.9 2,591,889 - +0.2 2,591,914 - -0.5 2,591,984 + +0.1 2,591,984 + +0.1 2,591,984 + -0.5 2,591,985 - +0.1 2,591,985 - +0.9 2,591,985 - +1.2 2,591,985 - +0.8 2,591,985 - +0.4 2,591,985 - +0.6 2,591,985 - -0.0 2,591,985 - -2.0 2,591,985 - +1.8 2,591,986 + -0.8 2,591,987 - +0.5 2,591,987 - +0.5 2,591,988 + -0.4 2,591,988 + -0.7 2,591,989 - -0.5 2,591,989 - +0.3 2,591,989 - -0.5 2,591,989 - +0.5 2,591,989 - +0.0 2,591,989 - -0.3 2,592,015 - +1.8 2,592,017 - -0.9 2,592,121 - +0.4 2,592,290 + +0.3 2,592,290 + +1.0 2,592,290 + +0.5 2,592,290 + +0.7 2,592,291 - -0.2 2,592,291 - +0.7 2,592,291 - +0.2 2,592,442 + PS417_11900 0.47 +0.4 2,592,511 + PS417_11900 0.64 +0.1 2,592,512 - PS417_11900 0.64 +0.4 2,592,596 + PS417_11900 0.85 +0.4 2,592,597 - PS417_11900 0.85 +0.4 2,592,741 - +0.3 2,592,775 + -0.3 2,592,775 + -0.6 2,592,960 - +0.2 2,593,079 + PS417_11905 0.15 +1.0 2,593,079 + PS417_11905 0.15 -1.8 2,593,080 - PS417_11905 0.15 +0.3 2,593,198 - PS417_11905 0.23 +0.4 2,593,653 + PS417_11905 0.51 +1.5 2,593,922 + PS417_11905 0.68 +0.5 2,593,922 + PS417_11905 0.68 +0.5 2,593,922 + PS417_11905 0.68 -0.8 2,593,923 - PS417_11905 0.68 +1.3 2,593,923 - PS417_11905 0.68 +0.6 2,593,923 - PS417_11905 0.68 +0.4 2,593,923 - PS417_11905 0.68 -0.1 2,594,021 + PS417_11905 0.74 +0.5 2,594,021 + PS417_11905 0.74 +1.4 2,594,054 + PS417_11905 0.76 -0.7 2,594,055 - PS417_11905 0.76 +0.7 2,594,165 + PS417_11905 0.83 +0.2 2,594,166 - PS417_11905 0.83 +0.5 2,594,312 + -0.2 2,594,312 + -0.2 2,594,313 - -1.2 2,594,313 - -1.5 2,594,313 - +0.2 2,594,399 + -0.3 2,594,400 - -0.3 2,594,400 - -0.4 2,594,459 + -0.0 2,594,528 - -0.3 2,594,759 - +1.0 2,595,061 - +0.2 2,595,294 + -0.2 2,595,314 - +0.1 2,595,400 + -0.0 2,595,400 + -0.1 2,595,401 - +1.2 2,595,401 - +0.9 2,595,406 - +0.0
Or see this region's nucleotide sequence