Strain Fitness in Pseudomonas simiae WCS417 around PS417_11905

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_11900 and PS417_11905 are separated by 180 nucleotidesPS417_11905 and PS417_11910 are separated by 115 nucleotidesPS417_11910 and PS417_11915 are separated by 6 nucleotidesPS417_11915 and PS417_11920 are separated by 68 nucleotidesPS417_11920 and PS417_11925 are separated by 138 nucleotides PS417_11900: PS417_11900 - conjugal transfer protein TraR, at 2,592,251 to 2,592,655 _11900 PS417_11905: PS417_11905 - chemotaxis protein, at 2,592,836 to 2,594,431 _11905 PS417_11910: PS417_11910 - hypothetical protein, at 2,594,547 to 2,594,750 _11910 PS417_11915: PS417_11915 - hypothetical protein, at 2,594,757 to 2,594,993 _11915 PS417_11920: PS417_11920 - hypothetical protein, at 2,595,062 to 2,595,292 _11920 PS417_11925: PS417_11925 - hypothetical protein, at 2,595,431 to 2,595,634 _11925 Position (kb) 2592 2593 2594 2595Strain fitness (log2 ratio) -2 -1 0 1 2at 2591.889 kb on - strandat 2591.889 kb on - strandat 2591.914 kb on - strandat 2591.984 kb on + strandat 2591.984 kb on + strandat 2591.984 kb on + strandat 2591.985 kb on - strandat 2591.985 kb on - strandat 2591.985 kb on - strandat 2591.985 kb on - strandat 2591.985 kb on - strandat 2591.985 kb on - strandat 2591.985 kb on - strandat 2591.985 kb on - strandat 2591.985 kb on - strandat 2591.986 kb on + strandat 2591.987 kb on - strandat 2591.987 kb on - strandat 2591.988 kb on + strandat 2591.988 kb on + strandat 2591.989 kb on - strandat 2591.989 kb on - strandat 2591.989 kb on - strandat 2591.989 kb on - strandat 2591.989 kb on - strandat 2591.989 kb on - strandat 2592.015 kb on - strandat 2592.017 kb on - strandat 2592.121 kb on - strandat 2592.290 kb on + strandat 2592.290 kb on + strandat 2592.290 kb on + strandat 2592.290 kb on + strandat 2592.291 kb on - strandat 2592.291 kb on - strandat 2592.291 kb on - strandat 2592.442 kb on + strand, within PS417_11900at 2592.511 kb on + strand, within PS417_11900at 2592.512 kb on - strand, within PS417_11900at 2592.596 kb on + strand, within PS417_11900at 2592.597 kb on - strand, within PS417_11900at 2592.741 kb on - strandat 2592.775 kb on + strandat 2592.775 kb on + strandat 2592.960 kb on - strandat 2593.079 kb on + strand, within PS417_11905at 2593.079 kb on + strand, within PS417_11905at 2593.080 kb on - strand, within PS417_11905at 2593.198 kb on - strand, within PS417_11905at 2593.653 kb on + strand, within PS417_11905at 2593.922 kb on + strand, within PS417_11905at 2593.922 kb on + strand, within PS417_11905at 2593.922 kb on + strand, within PS417_11905at 2593.923 kb on - strand, within PS417_11905at 2593.923 kb on - strand, within PS417_11905at 2593.923 kb on - strand, within PS417_11905at 2593.923 kb on - strand, within PS417_11905at 2594.021 kb on + strand, within PS417_11905at 2594.021 kb on + strand, within PS417_11905at 2594.054 kb on + strand, within PS417_11905at 2594.055 kb on - strand, within PS417_11905at 2594.165 kb on + strand, within PS417_11905at 2594.166 kb on - strand, within PS417_11905at 2594.312 kb on + strandat 2594.312 kb on + strandat 2594.313 kb on - strandat 2594.313 kb on - strandat 2594.313 kb on - strandat 2594.399 kb on + strandat 2594.400 kb on - strandat 2594.400 kb on - strandat 2594.459 kb on + strandat 2594.528 kb on - strandat 2594.759 kb on - strandat 2595.061 kb on - strandat 2595.294 kb on + strandat 2595.314 kb on - strandat 2595.400 kb on + strandat 2595.400 kb on + strandat 2595.401 kb on - strandat 2595.401 kb on - strandat 2595.406 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
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2,591,889 - +0.9
2,591,889 - +0.2
2,591,914 - -0.5
2,591,984 + +0.1
2,591,984 + +0.1
2,591,984 + -0.5
2,591,985 - +0.1
2,591,985 - +0.9
2,591,985 - +1.2
2,591,985 - +0.8
2,591,985 - +0.4
2,591,985 - +0.6
2,591,985 - -0.0
2,591,985 - -2.0
2,591,985 - +1.8
2,591,986 + -0.8
2,591,987 - +0.5
2,591,987 - +0.5
2,591,988 + -0.4
2,591,988 + -0.7
2,591,989 - -0.5
2,591,989 - +0.3
2,591,989 - -0.5
2,591,989 - +0.5
2,591,989 - +0.0
2,591,989 - -0.3
2,592,015 - +1.8
2,592,017 - -0.9
2,592,121 - +0.4
2,592,290 + +0.3
2,592,290 + +1.0
2,592,290 + +0.5
2,592,290 + +0.7
2,592,291 - -0.2
2,592,291 - +0.7
2,592,291 - +0.2
2,592,442 + PS417_11900 0.47 +0.4
2,592,511 + PS417_11900 0.64 +0.1
2,592,512 - PS417_11900 0.64 +0.4
2,592,596 + PS417_11900 0.85 +0.4
2,592,597 - PS417_11900 0.85 +0.4
2,592,741 - +0.3
2,592,775 + -0.3
2,592,775 + -0.6
2,592,960 - +0.2
2,593,079 + PS417_11905 0.15 +1.0
2,593,079 + PS417_11905 0.15 -1.8
2,593,080 - PS417_11905 0.15 +0.3
2,593,198 - PS417_11905 0.23 +0.4
2,593,653 + PS417_11905 0.51 +1.5
2,593,922 + PS417_11905 0.68 +0.5
2,593,922 + PS417_11905 0.68 +0.5
2,593,922 + PS417_11905 0.68 -0.8
2,593,923 - PS417_11905 0.68 +1.3
2,593,923 - PS417_11905 0.68 +0.6
2,593,923 - PS417_11905 0.68 +0.4
2,593,923 - PS417_11905 0.68 -0.1
2,594,021 + PS417_11905 0.74 +0.5
2,594,021 + PS417_11905 0.74 +1.4
2,594,054 + PS417_11905 0.76 -0.7
2,594,055 - PS417_11905 0.76 +0.7
2,594,165 + PS417_11905 0.83 +0.2
2,594,166 - PS417_11905 0.83 +0.5
2,594,312 + -0.2
2,594,312 + -0.2
2,594,313 - -1.2
2,594,313 - -1.5
2,594,313 - +0.2
2,594,399 + -0.3
2,594,400 - -0.3
2,594,400 - -0.4
2,594,459 + -0.0
2,594,528 - -0.3
2,594,759 - +1.0
2,595,061 - +0.2
2,595,294 + -0.2
2,595,314 - +0.1
2,595,400 + -0.0
2,595,400 + -0.1
2,595,401 - +1.2
2,595,401 - +0.9
2,595,406 - +0.0

Or see this region's nucleotide sequence