Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26385 and PS417_26390 are separated by 190 nucleotides PS417_26390 and PS417_26395 overlap by 4 nucleotides PS417_26395 and PS417_26400 are separated by 19 nucleotides PS417_26400 and PS417_26405 are separated by 42 nucleotides
PS417_26385: PS417_26385 - amino acid ABC transporter substrate-binding protein, at 5,707,585 to 5,708,322
_26385
PS417_26390: PS417_26390 - acyltransferase, at 5,708,513 to 5,708,965
_26390
PS417_26395: PS417_26395 - hypothetical protein, at 5,708,962 to 5,709,258
_26395
PS417_26400: PS417_26400 - metal-dependent hydrolase, at 5,709,278 to 5,709,778
_26400
PS417_26405: PS417_26405 - diguanylate cyclase, at 5,709,821 to 5,711,926
_26405
Position (kb) 5709
5710 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5708.281 kb on + strand at 5708.367 kb on + strand at 5708.368 kb on - strand at 5708.368 kb on - strand at 5708.373 kb on + strand at 5708.374 kb on - strand at 5708.374 kb on - strand at 5708.374 kb on - strand at 5708.384 kb on - strand at 5708.445 kb on - strand at 5708.477 kb on - strand at 5708.479 kb on + strand at 5708.497 kb on - strand at 5708.497 kb on - strand at 5708.497 kb on - strand at 5708.497 kb on - strand at 5708.500 kb on - strand at 5708.700 kb on - strand, within PS417_26390 at 5708.883 kb on - strand, within PS417_26390 at 5708.885 kb on + strand, within PS417_26390 at 5708.922 kb on - strand at 5709.126 kb on + strand, within PS417_26395 at 5709.206 kb on + strand, within PS417_26395 at 5709.206 kb on + strand, within PS417_26395 at 5709.216 kb on - strand, within PS417_26395 at 5709.303 kb on + strand at 5709.304 kb on - strand at 5709.313 kb on - strand at 5709.357 kb on + strand, within PS417_26400 at 5709.373 kb on - strand, within PS417_26400 at 5709.493 kb on + strand, within PS417_26400 at 5709.494 kb on - strand, within PS417_26400 at 5709.636 kb on + strand, within PS417_26400 at 5709.637 kb on - strand, within PS417_26400 at 5709.895 kb on + strand at 5709.959 kb on + strand at 5709.994 kb on + strand at 5710.159 kb on + strand, within PS417_26405 at 5710.159 kb on + strand, within PS417_26405 at 5710.159 kb on + strand, within PS417_26405 at 5710.160 kb on - strand, within PS417_26405 at 5710.160 kb on - strand, within PS417_26405 at 5710.160 kb on - strand, within PS417_26405 at 5710.160 kb on - strand, within PS417_26405 at 5710.387 kb on + strand, within PS417_26405 at 5710.387 kb on + strand, within PS417_26405 at 5710.388 kb on - strand, within PS417_26405 at 5710.624 kb on - strand, within PS417_26405 at 5710.627 kb on - strand, within PS417_26405 at 5710.663 kb on - strand, within PS417_26405 at 5710.663 kb on - strand, within PS417_26405
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 5,708,281 + +0.3 5,708,367 + +0.4 5,708,368 - +0.5 5,708,368 - -0.5 5,708,373 + -1.0 5,708,374 - +0.4 5,708,374 - -0.1 5,708,374 - +0.3 5,708,384 - -2.8 5,708,445 - +0.1 5,708,477 - -0.3 5,708,479 + -1.7 5,708,497 - -1.1 5,708,497 - -0.0 5,708,497 - -1.2 5,708,497 - +0.2 5,708,500 - -0.3 5,708,700 - PS417_26390 0.41 +0.4 5,708,883 - PS417_26390 0.82 -1.1 5,708,885 + PS417_26390 0.82 +0.7 5,708,922 - +0.7 5,709,126 + PS417_26395 0.55 +2.0 5,709,206 + PS417_26395 0.82 +0.0 5,709,206 + PS417_26395 0.82 -2.8 5,709,216 - PS417_26395 0.86 -0.4 5,709,303 + -1.2 5,709,304 - +0.6 5,709,313 - +1.1 5,709,357 + PS417_26400 0.16 +2.2 5,709,373 - PS417_26400 0.19 -1.1 5,709,493 + PS417_26400 0.43 +1.5 5,709,494 - PS417_26400 0.43 +1.5 5,709,636 + PS417_26400 0.71 -0.3 5,709,637 - PS417_26400 0.72 +0.5 5,709,895 + +0.9 5,709,959 + +0.6 5,709,994 + -0.5 5,710,159 + PS417_26405 0.16 -0.4 5,710,159 + PS417_26405 0.16 +0.1 5,710,159 + PS417_26405 0.16 +0.0 5,710,160 - PS417_26405 0.16 -0.3 5,710,160 - PS417_26405 0.16 -0.4 5,710,160 - PS417_26405 0.16 -0.5 5,710,160 - PS417_26405 0.16 +0.7 5,710,387 + PS417_26405 0.27 -0.4 5,710,387 + PS417_26405 0.27 -0.5 5,710,388 - PS417_26405 0.27 +0.1 5,710,624 - PS417_26405 0.38 +0.2 5,710,627 - PS417_26405 0.38 -0.4 5,710,663 - PS417_26405 0.40 +0.3 5,710,663 - PS417_26405 0.40 +0.8
Or see this region's nucleotide sequence