Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00515 and PS417_00520 are separated by 68 nucleotides PS417_00520 and PS417_00525 are separated by 376 nucleotides
PS417_00515: PS417_00515 - membrane protein, at 103,404 to 104,171
_00515
PS417_00520: PS417_00520 - citrate transporter, at 104,240 to 105,547
_00520
PS417_00525: PS417_00525 - hypothetical protein, at 105,924 to 107,885
_00525
Position (kb) 104
105
106 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 103.253 kb on + strand at 103.253 kb on + strand at 103.253 kb on + strand at 103.253 kb on + strand at 103.253 kb on + strand at 103.254 kb on - strand at 103.254 kb on - strand at 103.254 kb on - strand at 103.259 kb on + strand at 103.260 kb on - strand at 103.266 kb on + strand at 103.267 kb on - strand at 103.267 kb on - strand at 103.273 kb on + strand at 103.274 kb on - strand at 103.274 kb on - strand at 103.274 kb on - strand at 103.274 kb on - strand at 103.274 kb on - strand at 103.307 kb on - strand at 103.307 kb on - strand at 103.307 kb on - strand at 103.310 kb on + strand at 103.310 kb on + strand at 103.311 kb on - strand at 103.311 kb on - strand at 103.311 kb on - strand at 103.311 kb on - strand at 103.311 kb on - strand at 103.311 kb on - strand at 103.525 kb on + strand, within PS417_00515 at 103.525 kb on + strand, within PS417_00515 at 103.531 kb on + strand, within PS417_00515 at 103.708 kb on - strand, within PS417_00515 at 103.789 kb on + strand, within PS417_00515 at 103.789 kb on + strand, within PS417_00515 at 103.789 kb on + strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.855 kb on + strand, within PS417_00515 at 103.856 kb on - strand, within PS417_00515 at 103.856 kb on - strand, within PS417_00515 at 103.856 kb on - strand, within PS417_00515 at 104.037 kb on - strand, within PS417_00515 at 104.048 kb on + strand, within PS417_00515 at 104.048 kb on + strand, within PS417_00515 at 104.049 kb on - strand, within PS417_00515 at 104.049 kb on - strand, within PS417_00515 at 104.049 kb on - strand, within PS417_00515 at 104.049 kb on - strand, within PS417_00515 at 104.049 kb on - strand, within PS417_00515 at 104.049 kb on - strand, within PS417_00515 at 104.195 kb on - strand at 104.243 kb on + strand at 104.243 kb on + strand at 104.243 kb on + strand at 104.244 kb on - strand at 104.244 kb on - strand at 104.291 kb on + strand at 104.377 kb on - strand, within PS417_00520 at 104.500 kb on - strand, within PS417_00520 at 104.500 kb on - strand, within PS417_00520 at 104.656 kb on + strand, within PS417_00520 at 104.657 kb on - strand, within PS417_00520 at 104.691 kb on - strand, within PS417_00520 at 104.742 kb on + strand, within PS417_00520 at 104.964 kb on + strand, within PS417_00520 at 105.195 kb on + strand, within PS417_00520 at 105.195 kb on + strand, within PS417_00520 at 105.195 kb on + strand, within PS417_00520 at 105.195 kb on + strand, within PS417_00520 at 105.196 kb on - strand, within PS417_00520 at 105.196 kb on - strand, within PS417_00520 at 105.196 kb on - strand, within PS417_00520 at 105.196 kb on - strand, within PS417_00520 at 105.196 kb on - strand, within PS417_00520 at 105.342 kb on + strand, within PS417_00520 at 105.342 kb on + strand, within PS417_00520 at 105.343 kb on - strand, within PS417_00520 at 105.547 kb on + strand at 105.548 kb on - strand at 105.553 kb on + strand at 105.554 kb on - strand at 105.554 kb on - strand at 105.565 kb on - strand at 105.690 kb on - strand at 105.733 kb on + strand at 105.734 kb on - strand at 105.783 kb on + strand at 105.783 kb on + strand at 105.784 kb on - strand at 105.784 kb on - strand at 105.784 kb on - strand at 105.784 kb on - strand at 105.798 kb on + strand at 105.925 kb on + strand at 105.953 kb on + strand at 106.265 kb on - strand, within PS417_00525 at 106.265 kb on - strand, within PS417_00525 at 106.493 kb on - strand, within PS417_00525
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 103,253 + -2.0 103,253 + -0.3 103,253 + +0.1 103,253 + -0.8 103,253 + -0.4 103,254 - +0.7 103,254 - -0.8 103,254 - +0.0 103,259 + +2.0 103,260 - -0.5 103,266 + -0.5 103,267 - -0.9 103,267 - -0.1 103,273 + -0.6 103,274 - +3.1 103,274 - -3.5 103,274 - -0.0 103,274 - +0.9 103,274 - +2.0 103,307 - -2.9 103,307 - -1.2 103,307 - -0.2 103,310 + +1.2 103,310 + -0.7 103,311 - +0.3 103,311 - -0.7 103,311 - +0.4 103,311 - +1.1 103,311 - -0.5 103,311 - +0.8 103,525 + PS417_00515 0.16 -0.6 103,525 + PS417_00515 0.16 -0.3 103,531 + PS417_00515 0.17 -1.0 103,708 - PS417_00515 0.40 -0.6 103,789 + PS417_00515 0.50 -0.5 103,789 + PS417_00515 0.50 -0.0 103,789 + PS417_00515 0.50 +0.2 103,790 - PS417_00515 0.50 +0.9 103,790 - PS417_00515 0.50 -0.7 103,790 - PS417_00515 0.50 +0.2 103,790 - PS417_00515 0.50 +0.1 103,790 - PS417_00515 0.50 -0.8 103,790 - PS417_00515 0.50 -0.2 103,790 - PS417_00515 0.50 -0.2 103,790 - PS417_00515 0.50 -0.8 103,855 + PS417_00515 0.59 -1.2 103,856 - PS417_00515 0.59 -0.9 103,856 - PS417_00515 0.59 +1.0 103,856 - PS417_00515 0.59 +0.4 104,037 - PS417_00515 0.82 +1.9 104,048 + PS417_00515 0.84 +2.3 104,048 + PS417_00515 0.84 +1.0 104,049 - PS417_00515 0.84 +0.0 104,049 - PS417_00515 0.84 -0.9 104,049 - PS417_00515 0.84 +2.5 104,049 - PS417_00515 0.84 +2.0 104,049 - PS417_00515 0.84 -0.5 104,049 - PS417_00515 0.84 +0.3 104,195 - -1.4 104,243 + -0.1 104,243 + +0.0 104,243 + +3.0 104,244 - +1.3 104,244 - +0.1 104,291 + +1.8 104,377 - PS417_00520 0.10 -0.5 104,500 - PS417_00520 0.20 +2.4 104,500 - PS417_00520 0.20 +1.2 104,656 + PS417_00520 0.32 +0.2 104,657 - PS417_00520 0.32 +0.7 104,691 - PS417_00520 0.34 -1.7 104,742 + PS417_00520 0.38 +2.0 104,964 + PS417_00520 0.55 -0.0 105,195 + PS417_00520 0.73 +1.2 105,195 + PS417_00520 0.73 +0.7 105,195 + PS417_00520 0.73 +0.3 105,195 + PS417_00520 0.73 -0.3 105,196 - PS417_00520 0.73 +1.1 105,196 - PS417_00520 0.73 +0.7 105,196 - PS417_00520 0.73 -0.3 105,196 - PS417_00520 0.73 +0.6 105,196 - PS417_00520 0.73 -0.9 105,342 + PS417_00520 0.84 +0.3 105,342 + PS417_00520 0.84 +0.7 105,343 - PS417_00520 0.84 +0.5 105,547 + -1.0 105,548 - -2.2 105,553 + -0.9 105,554 - -0.4 105,554 - -1.2 105,565 - +0.3 105,690 - -1.6 105,733 + -0.9 105,734 - -2.6 105,783 + -0.5 105,783 + +0.4 105,784 - +0.0 105,784 - +0.3 105,784 - -0.8 105,784 - -0.2 105,798 + +0.5 105,925 + +0.1 105,953 + +0.3 106,265 - PS417_00525 0.17 -0.5 106,265 - PS417_00525 0.17 +3.2 106,493 - PS417_00525 0.29 +0.3
Or see this region's nucleotide sequence