Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25305 and PS417_25310 are separated by 11 nucleotides PS417_25310 and PS417_25315 are separated by 94 nucleotides PS417_25315 and PS417_25320 are separated by 64 nucleotides
PS417_25305: PS417_25305 - peptide ABC transporter permease, at 5,479,065 to 5,480,330
_25305
PS417_25310: PS417_25310 - hypothetical protein, at 5,480,342 to 5,480,854
_25310
PS417_25315: PS417_25315 - membrane protein, at 5,480,949 to 5,481,647
_25315
PS417_25320: PS417_25320 - dTDP-4-dehydrorhamnose reductase, at 5,481,712 to 5,482,581
_25320
Position (kb) 5480
5481 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5479.536 kb on + strand, within PS417_25305 at 5479.536 kb on + strand, within PS417_25305 at 5479.536 kb on + strand, within PS417_25305 at 5479.537 kb on - strand, within PS417_25305 at 5479.573 kb on + strand, within PS417_25305 at 5479.906 kb on + strand, within PS417_25305 at 5479.906 kb on + strand, within PS417_25305 at 5479.906 kb on + strand, within PS417_25305 at 5480.047 kb on + strand, within PS417_25305 at 5480.048 kb on - strand, within PS417_25305 at 5480.048 kb on - strand, within PS417_25305 at 5480.048 kb on - strand, within PS417_25305 at 5480.067 kb on - strand, within PS417_25305 at 5480.139 kb on + strand, within PS417_25305 at 5480.140 kb on - strand, within PS417_25305 at 5480.320 kb on + strand at 5480.321 kb on - strand at 5480.738 kb on + strand, within PS417_25310 at 5480.739 kb on - strand, within PS417_25310 at 5480.739 kb on - strand, within PS417_25310 at 5480.747 kb on + strand, within PS417_25310 at 5480.837 kb on + strand at 5480.837 kb on + strand at 5480.837 kb on + strand at 5480.837 kb on + strand at 5480.837 kb on + strand at 5480.838 kb on - strand at 5480.838 kb on - strand at 5480.838 kb on - strand at 5480.920 kb on - strand at 5481.007 kb on + strand at 5481.007 kb on + strand at 5481.174 kb on + strand, within PS417_25315 at 5481.175 kb on - strand, within PS417_25315 at 5481.319 kb on - strand, within PS417_25315 at 5481.321 kb on + strand, within PS417_25315 at 5481.322 kb on - strand, within PS417_25315 at 5481.355 kb on - strand, within PS417_25315 at 5481.376 kb on - strand, within PS417_25315 at 5481.376 kb on - strand, within PS417_25315 at 5481.483 kb on + strand, within PS417_25315 at 5481.483 kb on + strand, within PS417_25315 at 5481.483 kb on + strand, within PS417_25315 at 5481.484 kb on - strand, within PS417_25315 at 5481.526 kb on - strand, within PS417_25315 at 5481.619 kb on - strand at 5481.619 kb on - strand at 5481.619 kb on - strand at 5481.646 kb on - strand at 5481.709 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 5,479,536 + PS417_25305 0.37 -1.0 5,479,536 + PS417_25305 0.37 -1.4 5,479,536 + PS417_25305 0.37 +1.1 5,479,537 - PS417_25305 0.37 -1.2 5,479,573 + PS417_25305 0.40 +0.4 5,479,906 + PS417_25305 0.66 -3.1 5,479,906 + PS417_25305 0.66 -0.3 5,479,906 + PS417_25305 0.66 -2.0 5,480,047 + PS417_25305 0.78 -1.0 5,480,048 - PS417_25305 0.78 -2.3 5,480,048 - PS417_25305 0.78 -0.1 5,480,048 - PS417_25305 0.78 +0.1 5,480,067 - PS417_25305 0.79 -0.8 5,480,139 + PS417_25305 0.85 +0.4 5,480,140 - PS417_25305 0.85 -0.8 5,480,320 + -1.0 5,480,321 - +0.8 5,480,738 + PS417_25310 0.77 -1.8 5,480,739 - PS417_25310 0.77 -3.5 5,480,739 - PS417_25310 0.77 -0.4 5,480,747 + PS417_25310 0.79 -0.2 5,480,837 + +0.3 5,480,837 + +1.3 5,480,837 + +1.4 5,480,837 + -1.8 5,480,837 + +1.1 5,480,838 - -1.0 5,480,838 - +0.7 5,480,838 - +0.3 5,480,920 - +0.4 5,481,007 + -1.8 5,481,007 + +2.6 5,481,174 + PS417_25315 0.32 -0.0 5,481,175 - PS417_25315 0.32 -0.8 5,481,319 - PS417_25315 0.53 -2.7 5,481,321 + PS417_25315 0.53 -1.2 5,481,322 - PS417_25315 0.53 +0.4 5,481,355 - PS417_25315 0.58 -1.9 5,481,376 - PS417_25315 0.61 -1.0 5,481,376 - PS417_25315 0.61 -1.0 5,481,483 + PS417_25315 0.76 +0.3 5,481,483 + PS417_25315 0.76 -0.8 5,481,483 + PS417_25315 0.76 -1.4 5,481,484 - PS417_25315 0.77 -1.9 5,481,526 - PS417_25315 0.83 -0.0 5,481,619 - -0.9 5,481,619 - -1.5 5,481,619 - -1.9 5,481,646 - +0.3 5,481,709 + +0.6
Or see this region's nucleotide sequence