Strain Fitness in Pseudomonas simiae WCS417 around PS417_19655

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_19645 and PS417_19650 are separated by 0 nucleotidesPS417_19650 and PS417_19655 are separated by 81 nucleotidesPS417_19655 and PS417_19660 overlap by 1 nucleotidesPS417_19660 and PS417_19665 are separated by 51 nucleotides PS417_19645: PS417_19645 - chemotaxis protein, at 4,271,244 to 4,271,636 _19645 PS417_19650: PS417_19650 - chemotaxis protein CheW, at 4,271,637 to 4,272,119 _19650 PS417_19655: PS417_19655 - chemotaxis protein CheW, at 4,272,201 to 4,272,989 _19655 PS417_19660: PS417_19660 - cobalamin biosynthesis protein CobQ, at 4,272,989 to 4,273,777 _19660 PS417_19665: PS417_19665 - flagellar motor protein MotD, at 4,273,829 to 4,274,716 _19665 Position (kb) 4272 4273Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4271.227 kb on - strandat 4271.234 kb on - strandat 4271.234 kb on - strandat 4271.237 kb on + strandat 4271.237 kb on + strandat 4271.237 kb on + strandat 4271.253 kb on - strandat 4271.566 kb on + strand, within PS417_19645at 4271.566 kb on + strand, within PS417_19645at 4271.566 kb on + strand, within PS417_19645at 4271.965 kb on + strand, within PS417_19650at 4271.965 kb on + strand, within PS417_19650at 4271.966 kb on - strand, within PS417_19650at 4272.040 kb on + strand, within PS417_19650at 4272.040 kb on + strand, within PS417_19650at 4272.040 kb on + strand, within PS417_19650at 4272.066 kb on - strand, within PS417_19650at 4272.120 kb on - strandat 4272.146 kb on + strandat 4272.147 kb on - strandat 4272.159 kb on + strandat 4272.159 kb on + strandat 4272.160 kb on - strandat 4272.166 kb on - strandat 4272.287 kb on + strand, within PS417_19655at 4272.287 kb on + strand, within PS417_19655at 4272.288 kb on - strand, within PS417_19655at 4272.288 kb on - strand, within PS417_19655at 4272.288 kb on - strand, within PS417_19655at 4272.583 kb on + strand, within PS417_19655at 4273.052 kb on + strandat 4273.052 kb on + strandat 4273.134 kb on + strand, within PS417_19660at 4273.134 kb on + strand, within PS417_19660at 4273.134 kb on + strand, within PS417_19660at 4273.599 kb on + strand, within PS417_19660at 4273.600 kb on - strand, within PS417_19660at 4273.638 kb on + strand, within PS417_19660at 4273.639 kb on - strand, within PS417_19660at 4273.825 kb on - strandat 4273.825 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
remove
4,271,227 - +0.8
4,271,234 - -1.4
4,271,234 - -0.1
4,271,237 + +0.2
4,271,237 + +1.1
4,271,237 + -0.4
4,271,253 - +0.1
4,271,566 + PS417_19645 0.82 -1.6
4,271,566 + PS417_19645 0.82 -0.6
4,271,566 + PS417_19645 0.82 +1.9
4,271,965 + PS417_19650 0.68 -4.0
4,271,965 + PS417_19650 0.68 -2.1
4,271,966 - PS417_19650 0.68 -2.5
4,272,040 + PS417_19650 0.83 -1.6
4,272,040 + PS417_19650 0.83 -1.8
4,272,040 + PS417_19650 0.83 -2.9
4,272,066 - PS417_19650 0.89 -4.0
4,272,120 - -2.8
4,272,146 + -4.4
4,272,147 - +0.4
4,272,159 + -3.1
4,272,159 + -0.6
4,272,160 - -2.0
4,272,166 - +0.5
4,272,287 + PS417_19655 0.11 -4.7
4,272,287 + PS417_19655 0.11 -3.4
4,272,288 - PS417_19655 0.11 -1.1
4,272,288 - PS417_19655 0.11 -0.4
4,272,288 - PS417_19655 0.11 -3.3
4,272,583 + PS417_19655 0.48 -2.1
4,273,052 + -1.2
4,273,052 + -3.5
4,273,134 + PS417_19660 0.18 -4.0
4,273,134 + PS417_19660 0.18 -1.8
4,273,134 + PS417_19660 0.18 -3.6
4,273,599 + PS417_19660 0.77 -2.4
4,273,600 - PS417_19660 0.77 -2.1
4,273,638 + PS417_19660 0.82 -4.2
4,273,639 - PS417_19660 0.82 -3.2
4,273,825 - -1.6
4,273,825 - -2.1

Or see this region's nucleotide sequence