Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01860 and PS417_01865 overlap by 4 nucleotides PS417_01865 and PS417_01870 overlap by 1 nucleotides PS417_01870 and PS417_01875 are separated by 144 nucleotides
PS417_01860: PS417_01860 - ubiquinone biosynthesis protein UbiB, at 412,788 to 414,392
_01860
PS417_01865: PS417_01865 - sterol-binding protein, at 414,389 to 415,012
_01865
PS417_01870: PS417_01870 - ubiquinone biosynthesis methyltransferase UbiE, at 415,012 to 415,782
_01870
PS417_01875: PS417_01875 - polyhydroxyalkanoic acid system protein, at 415,927 to 416,202
_01875
Position (kb) 414
415
416 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 415.783 kb on - strand at 415.783 kb on - strand at 415.817 kb on - strand at 415.831 kb on - strand at 415.855 kb on + strand at 415.855 kb on + strand at 415.855 kb on + strand at 415.856 kb on - strand at 415.856 kb on - strand at 415.936 kb on - strand at 415.936 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 415,783 - -2.0 415,783 - -3.7 415,817 - +0.0 415,831 - +1.0 415,855 + -0.5 415,855 + -1.4 415,855 + -0.8 415,856 - +0.8 415,856 - +0.4 415,936 - +1.3 415,936 - +1.9
Or see this region's nucleotide sequence