Strain Fitness in Pseudomonas simiae WCS417 around PS417_13055

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_13045 and PS417_13050 are separated by 51 nucleotidesPS417_13050 and PS417_13055 overlap by 4 nucleotidesPS417_13055 and PS417_13060 are separated by 104 nucleotides PS417_13045: PS417_13045 - gamma-glutamyltranspeptidase, at 2,850,868 to 2,852,592 _13045 PS417_13050: PS417_13050 - N-acetylglucosamine-6-sulfatase, at 2,852,644 to 2,853,162 _13050 PS417_13055: PS417_13055 - aminotransferase, at 2,853,159 to 2,853,722 _13055 PS417_13060: PS417_13060 - chemotaxis protein, at 2,853,827 to 2,855,461 _13060 Position (kb) 2853 2854Strain fitness (log2 ratio) -2 -1 0 1at 2852.938 kb on - strand, within PS417_13050at 2853.027 kb on + strand, within PS417_13050at 2853.056 kb on + strand, within PS417_13050at 2853.124 kb on - strandat 2853.124 kb on - strandat 2853.259 kb on + strand, within PS417_13055at 2853.539 kb on - strand, within PS417_13055at 2853.614 kb on - strand, within PS417_13055at 2854.322 kb on + strand, within PS417_13060at 2854.525 kb on - strand, within PS417_13060at 2854.525 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
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2,852,938 - PS417_13050 0.57 -0.9
2,853,027 + PS417_13050 0.74 +1.7
2,853,056 + PS417_13050 0.79 +0.8
2,853,124 - +0.1
2,853,124 - +0.2
2,853,259 + PS417_13055 0.18 -0.8
2,853,539 - PS417_13055 0.67 -1.3
2,853,614 - PS417_13055 0.81 -0.6
2,854,322 + PS417_13060 0.30 -1.7
2,854,525 - PS417_13060 0.43 -2.3
2,854,525 - +0.8

Or see this region's nucleotide sequence