Strain Fitness in Escherichia coli BW25113 around b2242
Experiment: pinene 0.3125 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | pinene 0.3125 vol% |
---|---|---|---|---|---|
remove | |||||
2,351,298 | + | glpA | b2241 | 0.39 | +1.1 |
2,351,353 | + | glpA | b2241 | 0.42 | -0.5 |
2,351,353 | + | glpA | b2241 | 0.42 | +0.4 |
2,351,392 | - | glpA | b2241 | 0.44 | +0.1 |
2,351,608 | - | glpA | b2241 | 0.58 | -1.3 |
2,351,686 | - | glpA | b2241 | 0.62 | +0.1 |
2,351,686 | - | glpA | b2241 | 0.62 | -0.3 |
2,351,773 | + | glpA | b2241 | 0.68 | -0.5 |
2,351,773 | + | glpA | b2241 | 0.68 | +0.1 |
2,351,792 | + | glpA | b2241 | 0.69 | +0.0 |
2,351,792 | + | glpA | b2241 | 0.69 | -0.5 |
2,351,801 | + | glpA | b2241 | 0.69 | -0.3 |
2,351,801 | + | glpA | b2241 | 0.69 | +0.5 |
2,351,802 | + | glpA | b2241 | 0.70 | +0.4 |
2,351,802 | + | glpA | b2241 | 0.70 | +0.2 |
2,351,809 | - | glpA | b2241 | 0.70 | +0.4 |
2,351,816 | + | glpA | b2241 | 0.70 | -1.2 |
2,351,816 | + | glpA | b2241 | 0.70 | +1.4 |
2,351,816 | + | glpA | b2241 | 0.70 | +0.2 |
2,351,816 | + | glpA | b2241 | 0.70 | +0.1 |
2,351,826 | + | glpA | b2241 | 0.71 | -0.3 |
2,351,947 | + | glpA | b2241 | 0.78 | -0.8 |
2,351,947 | + | glpA | b2241 | 0.78 | +0.8 |
2,351,955 | - | glpA | b2241 | 0.79 | -0.2 |
2,351,955 | - | glpA | b2241 | 0.79 | +0.2 |
2,352,006 | - | glpA | b2241 | 0.82 | -0.0 |
2,352,059 | + | glpA | b2241 | 0.85 | +0.6 |
2,352,059 | + | glpA | b2241 | 0.85 | +0.9 |
2,352,067 | - | glpA | b2241 | 0.86 | -0.6 |
2,352,074 | - | glpA | b2241 | 0.86 | +1.4 |
2,352,104 | + | glpA | b2241 | 0.88 | +0.3 |
2,352,104 | + | glpA | b2241 | 0.88 | -0.3 |
2,352,122 | + | glpA | b2241 | 0.89 | -1.3 |
2,352,122 | + | glpA | b2241 | 0.89 | -0.4 |
2,352,265 | + | +1.0 | |||
2,352,300 | - | -0.7 | |||
2,352,326 | + | -0.1 | |||
2,352,347 | + | -0.3 | |||
2,352,369 | + | +0.5 | |||
2,352,440 | - | glpB | b2242 | 0.12 | -0.4 |
2,352,447 | + | glpB | b2242 | 0.13 | -0.7 |
2,352,461 | - | glpB | b2242 | 0.14 | -0.4 |
2,352,463 | + | glpB | b2242 | 0.14 | -0.1 |
2,352,463 | + | glpB | b2242 | 0.14 | +0.1 |
2,352,506 | + | glpB | b2242 | 0.17 | +0.6 |
2,352,506 | + | glpB | b2242 | 0.17 | -0.1 |
2,352,547 | + | glpB | b2242 | 0.21 | -1.0 |
2,352,631 | + | glpB | b2242 | 0.27 | -0.0 |
2,352,650 | + | glpB | b2242 | 0.29 | -0.2 |
2,352,650 | + | glpB | b2242 | 0.29 | -0.1 |
2,352,787 | - | glpB | b2242 | 0.40 | +0.0 |
2,353,281 | + | glpB | b2242 | 0.79 | -0.7 |
2,353,291 | + | glpB | b2242 | 0.80 | -0.0 |
2,353,291 | + | glpB | b2242 | 0.80 | +0.2 |
2,353,326 | - | glpB | b2242 | 0.82 | -1.2 |
2,353,326 | - | glpB | b2242 | 0.82 | +1.5 |
2,353,379 | - | glpB | b2242 | 0.87 | -1.4 |
2,353,400 | + | glpB | b2242 | 0.88 | +0.3 |
2,353,400 | + | glpB | b2242 | 0.88 | -0.1 |
2,353,436 | + | -0.4 | |||
2,353,436 | + | -0.3 | |||
2,353,446 | + | +1.1 | |||
2,353,575 | - | +0.8 | |||
2,353,575 | - | +0.0 | |||
2,353,577 | + | -0.0 | |||
2,353,577 | + | -0.3 | |||
2,353,615 | - | +0.5 | |||
2,353,684 | + | glpC | b2243 | 0.12 | -0.1 |
2,353,686 | + | glpC | b2243 | 0.12 | -0.0 |
2,353,696 | - | glpC | b2243 | 0.13 | +1.4 |
2,353,696 | - | glpC | b2243 | 0.13 | -0.0 |
2,353,767 | + | glpC | b2243 | 0.19 | +0.2 |
2,353,812 | + | glpC | b2243 | 0.23 | +1.0 |
2,353,853 | + | glpC | b2243 | 0.26 | +0.1 |
2,353,853 | + | glpC | b2243 | 0.26 | -0.2 |
2,353,871 | - | glpC | b2243 | 0.28 | -0.4 |
2,354,115 | - | glpC | b2243 | 0.48 | +0.5 |
2,354,125 | - | glpC | b2243 | 0.49 | -0.0 |
2,354,125 | - | glpC | b2243 | 0.49 | -0.6 |
2,354,169 | + | glpC | b2243 | 0.53 | +0.1 |
2,354,278 | - | glpC | b2243 | 0.62 | +0.2 |
2,354,438 | - | glpC | b2243 | 0.75 | -0.2 |
2,354,534 | + | glpC | b2243 | 0.83 | -0.7 |
2,354,542 | - | glpC | b2243 | 0.84 | -0.9 |
Or see this region's nucleotide sequence