Strain Fitness in Escherichia coli BW25113 around b1094

Experiment: pinene 0.3125 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfabD and fabG are separated by 12 nucleotidesfabG and acpP are separated by 210 nucleotidesacpP and fabF are separated by 87 nucleotides b1092: fabD - acyl carrier protein S-malonyltransferase (NCBI), at 1,148,951 to 1,149,880 fabD b1093: fabG - 3-oxoacyl-[acyl-carrier-protein] reductase (NCBI), at 1,149,893 to 1,150,627 fabG b1094: acpP - acyl carrier protein (NCBI), at 1,150,838 to 1,151,074 acpP b1095: fabF - 3-oxoacyl-(acyl carrier protein) synthase (NCBI), at 1,151,162 to 1,152,403 fabF Position (kb) 1150 1151 1152Strain fitness (log2 ratio) -3 -2 -1 0 1at 1149.875 kb on + strandat 1151.238 kb on + strandat 1151.266 kb on + strandat 1151.266 kb on + strandat 1151.368 kb on - strand, within fabFat 1151.416 kb on - strand, within fabFat 1151.427 kb on - strand, within fabFat 1151.427 kb on - strand, within fabFat 1151.530 kb on - strand, within fabFat 1151.530 kb on - strand, within fabFat 1151.535 kb on - strand, within fabFat 1151.535 kb on - strand, within fabFat 1151.608 kb on + strand, within fabFat 1151.608 kb on + strand, within fabFat 1151.610 kb on + strand, within fabFat 1151.697 kb on - strandat 1151.697 kb on - strand, within fabFat 1151.703 kb on - strand, within fabFat 1151.783 kb on + strand, within fabFat 1152.010 kb on - strand, within fabFat 1152.010 kb on - strand, within fabF

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Per-strain Table

Position Strand Gene LocusTag Fraction pinene 0.3125 vol%
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1,149,875 + +0.6
1,151,238 + -2.2
1,151,266 + -1.4
1,151,266 + -1.5
1,151,368 - fabF b1095 0.17 -2.0
1,151,416 - fabF b1095 0.20 -1.0
1,151,427 - fabF b1095 0.21 -0.3
1,151,427 - fabF b1095 0.21 -0.3
1,151,530 - fabF b1095 0.30 -2.6
1,151,530 - fabF b1095 0.30 -0.2
1,151,535 - fabF b1095 0.30 -1.4
1,151,535 - fabF b1095 0.30 -0.8
1,151,608 + fabF b1095 0.36 -1.5
1,151,608 + fabF b1095 0.36 -1.7
1,151,610 + fabF b1095 0.36 -0.9
1,151,697 - -1.4
1,151,697 - fabF b1095 0.43 -1.4
1,151,703 - fabF b1095 0.44 -2.2
1,151,783 + fabF b1095 0.50 -0.7
1,152,010 - fabF b1095 0.68 -3.1
1,152,010 - fabF b1095 0.68 -0.6

Or see this region's nucleotide sequence