Experiment: pinene 0.3125 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybhH and ybhI are separated by 75 nucleotides ybhI and ybhJ are separated by 182 nucleotides
b0769: ybhH - hypothetical protein (NCBI), at 799,982 to 801,034
ybhH
b0770: ybhI - predicted transporter (NCBI), at 801,110 to 802,543
ybhI
b0771: ybhJ - putative enzyme (VIMSS), at 802,726 to 804,987
ybhJ
Position (kb) 801
802
803 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 800.112 kb on - strand, within ybhH at 800.139 kb on + strand, within ybhH at 800.147 kb on - strand, within ybhH at 800.147 kb on - strand, within ybhH at 800.151 kb on + strand, within ybhH at 800.159 kb on - strand, within ybhH at 800.170 kb on - strand, within ybhH at 800.175 kb on + strand, within ybhH at 800.203 kb on - strand, within ybhH at 800.207 kb on - strand, within ybhH at 800.233 kb on + strand, within ybhH at 800.233 kb on + strand, within ybhH at 800.234 kb on - strand, within ybhH at 800.239 kb on + strand, within ybhH at 800.239 kb on + strand, within ybhH at 800.241 kb on - strand, within ybhH at 800.241 kb on - strand, within ybhH at 800.250 kb on + strand, within ybhH at 800.250 kb on + strand, within ybhH at 800.257 kb on - strand, within ybhH at 800.280 kb on - strand, within ybhH at 800.280 kb on - strand, within ybhH at 800.336 kb on - strand, within ybhH at 800.336 kb on - strand, within ybhH at 800.345 kb on + strand, within ybhH at 800.360 kb on + strand, within ybhH at 800.379 kb on + strand, within ybhH at 800.407 kb on + strand, within ybhH at 800.412 kb on + strand, within ybhH at 800.412 kb on + strand, within ybhH at 800.426 kb on + strand, within ybhH at 800.426 kb on + strand, within ybhH at 800.437 kb on + strand, within ybhH at 800.445 kb on + strand, within ybhH at 800.445 kb on + strand, within ybhH at 800.451 kb on + strand, within ybhH at 800.454 kb on + strand, within ybhH at 800.513 kb on + strand, within ybhH at 800.540 kb on + strand, within ybhH at 800.540 kb on + strand, within ybhH at 800.543 kb on + strand, within ybhH at 800.548 kb on + strand, within ybhH at 800.550 kb on + strand, within ybhH at 800.550 kb on + strand, within ybhH at 800.553 kb on + strand, within ybhH at 800.553 kb on + strand, within ybhH at 800.553 kb on + strand, within ybhH at 800.553 kb on + strand, within ybhH at 800.556 kb on - strand, within ybhH at 800.558 kb on + strand, within ybhH at 800.558 kb on + strand, within ybhH at 800.563 kb on + strand, within ybhH at 800.673 kb on + strand, within ybhH at 800.673 kb on + strand, within ybhH at 800.673 kb on + strand, within ybhH at 800.673 kb on + strand, within ybhH at 800.673 kb on + strand, within ybhH at 800.673 kb on + strand, within ybhH at 800.673 kb on + strand, within ybhH at 800.673 kb on + strand, within ybhH at 800.673 kb on + strand, within ybhH at 800.681 kb on - strand, within ybhH at 800.681 kb on - strand, within ybhH at 800.681 kb on - strand, within ybhH at 800.683 kb on + strand, within ybhH at 800.696 kb on + strand, within ybhH at 800.826 kb on - strand, within ybhH at 800.858 kb on - strand, within ybhH at 800.862 kb on - strand, within ybhH at 800.886 kb on + strand, within ybhH at 800.915 kb on - strand, within ybhH at 800.917 kb on + strand, within ybhH at 800.922 kb on + strand, within ybhH at 800.927 kb on - strand, within ybhH at 800.939 kb on + strand at 800.947 kb on + strand at 800.954 kb on + strand at 800.959 kb on + strand at 800.963 kb on + strand at 800.964 kb on + strand at 801.065 kb on + strand at 801.071 kb on - strand at 801.084 kb on - strand at 801.085 kb on - strand at 801.170 kb on - strand at 801.190 kb on + strand at 801.196 kb on - strand at 801.196 kb on - strand at 801.197 kb on + strand at 801.205 kb on - strand at 801.205 kb on - strand at 801.232 kb on - strand at 801.232 kb on - strand at 801.237 kb on + strand at 801.250 kb on - strand at 801.258 kb on - strand, within ybhI at 801.263 kb on - strand, within ybhI at 801.264 kb on - strand, within ybhI at 801.280 kb on + strand, within ybhI at 801.280 kb on + strand, within ybhI at 801.315 kb on + strand at 801.317 kb on + strand, within ybhI at 801.320 kb on - strand, within ybhI at 801.397 kb on + strand, within ybhI at 801.536 kb on - strand, within ybhI at 801.538 kb on + strand, within ybhI at 801.538 kb on + strand, within ybhI at 801.538 kb on + strand, within ybhI at 801.538 kb on + strand, within ybhI at 801.546 kb on + strand, within ybhI at 801.546 kb on - strand, within ybhI at 801.546 kb on - strand, within ybhI at 801.596 kb on + strand, within ybhI at 801.630 kb on + strand, within ybhI at 801.644 kb on - strand, within ybhI at 801.663 kb on - strand, within ybhI at 801.765 kb on + strand, within ybhI at 801.767 kb on + strand, within ybhI at 801.771 kb on - strand, within ybhI at 801.794 kb on - strand, within ybhI at 801.806 kb on - strand, within ybhI at 801.873 kb on + strand, within ybhI at 801.893 kb on + strand, within ybhI at 801.893 kb on + strand, within ybhI at 801.961 kb on - strand, within ybhI at 801.976 kb on + strand, within ybhI at 801.976 kb on + strand, within ybhI at 801.985 kb on - strand, within ybhI at 801.994 kb on + strand, within ybhI at 802.026 kb on + strand, within ybhI at 802.026 kb on + strand, within ybhI at 802.036 kb on + strand, within ybhI at 802.112 kb on + strand, within ybhI at 802.118 kb on + strand, within ybhI at 802.152 kb on + strand, within ybhI at 802.153 kb on + strand, within ybhI at 802.180 kb on + strand, within ybhI at 802.184 kb on + strand, within ybhI at 802.190 kb on + strand, within ybhI at 802.190 kb on + strand, within ybhI at 802.195 kb on + strand, within ybhI at 802.263 kb on - strand, within ybhI at 802.266 kb on + strand, within ybhI at 802.272 kb on - strand, within ybhI at 802.272 kb on - strand, within ybhI at 802.273 kb on - strand, within ybhI at 802.273 kb on - strand, within ybhI at 802.275 kb on + strand, within ybhI at 802.275 kb on + strand, within ybhI at 802.282 kb on + strand, within ybhI at 802.309 kb on + strand, within ybhI at 802.309 kb on + strand, within ybhI at 802.319 kb on - strand, within ybhI at 802.322 kb on - strand, within ybhI at 802.328 kb on + strand, within ybhI at 802.338 kb on + strand, within ybhI at 802.348 kb on + strand, within ybhI at 802.348 kb on + strand, within ybhI at 802.348 kb on + strand, within ybhI at 802.354 kb on + strand, within ybhI at 802.356 kb on - strand, within ybhI at 802.360 kb on + strand, within ybhI at 802.362 kb on + strand, within ybhI at 802.362 kb on + strand, within ybhI at 802.368 kb on - strand, within ybhI at 802.368 kb on - strand, within ybhI at 802.369 kb on - strand, within ybhI at 802.382 kb on + strand, within ybhI at 802.382 kb on - strand, within ybhI at 802.384 kb on + strand, within ybhI at 802.384 kb on - strand, within ybhI at 802.390 kb on - strand, within ybhI at 802.390 kb on - strand, within ybhI at 802.410 kb on + strand at 802.418 kb on - strand at 802.420 kb on + strand at 802.421 kb on + strand at 802.440 kb on + strand at 802.455 kb on + strand at 802.455 kb on + strand at 802.455 kb on + strand at 802.455 kb on + strand at 802.455 kb on + strand at 802.463 kb on - strand at 802.469 kb on + strand at 802.484 kb on + strand at 802.488 kb on + strand at 802.494 kb on + strand at 802.494 kb on + strand at 802.502 kb on + strand at 802.507 kb on + strand at 802.507 kb on + strand at 802.512 kb on + strand at 802.515 kb on - strand at 802.525 kb on + strand at 802.538 kb on + strand at 802.576 kb on - strand at 802.595 kb on - strand at 802.609 kb on + strand at 802.634 kb on + strand at 802.634 kb on + strand at 802.665 kb on + strand at 802.702 kb on + strand at 802.702 kb on + strand at 802.702 kb on - strand at 802.702 kb on - strand at 802.709 kb on + strand at 802.717 kb on - strand at 802.719 kb on - strand at 802.844 kb on - strand at 802.849 kb on - strand at 802.849 kb on - strand at 802.849 kb on - strand at 802.849 kb on - strand at 802.932 kb on - strand at 802.944 kb on - strand at 802.944 kb on - strand at 802.944 kb on - strand at 802.946 kb on + strand at 802.946 kb on - strand at 802.946 kb on - strand at 802.948 kb on + strand at 802.954 kb on - strand, within ybhJ at 802.954 kb on - strand, within ybhJ at 802.954 kb on - strand, within ybhJ at 802.954 kb on - strand, within ybhJ at 802.954 kb on - strand, within ybhJ at 802.954 kb on - strand, within ybhJ at 802.956 kb on - strand, within ybhJ at 802.963 kb on - strand, within ybhJ at 802.963 kb on - strand, within ybhJ at 802.968 kb on - strand, within ybhJ at 802.968 kb on - strand, within ybhJ at 802.969 kb on - strand, within ybhJ at 802.969 kb on - strand, within ybhJ at 802.969 kb on - strand, within ybhJ at 802.969 kb on - strand, within ybhJ at 802.982 kb on + strand, within ybhJ at 802.982 kb on + strand, within ybhJ at 802.986 kb on - strand, within ybhJ at 802.987 kb on + strand, within ybhJ at 802.990 kb on - strand, within ybhJ at 802.990 kb on - strand, within ybhJ at 802.990 kb on - strand, within ybhJ at 802.992 kb on + strand, within ybhJ at 803.005 kb on + strand, within ybhJ at 803.009 kb on - strand, within ybhJ at 803.009 kb on - strand, within ybhJ at 803.013 kb on - strand, within ybhJ at 803.013 kb on - strand, within ybhJ at 803.019 kb on - strand, within ybhJ at 803.026 kb on - strand, within ybhJ at 803.027 kb on + strand, within ybhJ at 803.028 kb on - strand, within ybhJ at 803.030 kb on - strand, within ybhJ at 803.114 kb on + strand, within ybhJ at 803.129 kb on - strand, within ybhJ at 803.165 kb on + strand, within ybhJ at 803.165 kb on + strand, within ybhJ at 803.173 kb on + strand, within ybhJ at 803.173 kb on - strand, within ybhJ at 803.181 kb on - strand, within ybhJ at 803.209 kb on - strand, within ybhJ at 803.209 kb on - strand, within ybhJ at 803.217 kb on + strand, within ybhJ at 803.217 kb on + strand, within ybhJ at 803.230 kb on - strand, within ybhJ at 803.297 kb on - strand, within ybhJ at 803.336 kb on - strand, within ybhJ at 803.336 kb on - strand, within ybhJ at 803.394 kb on + strand, within ybhJ at 803.394 kb on + strand, within ybhJ
Per-strain Table
Position Strand Gene LocusTag Fraction pinene 0.3125 vol% remove 800,112 - ybhH b0769 0.12 -1.6 800,139 + ybhH b0769 0.15 +1.5 800,147 - ybhH b0769 0.16 +0.9 800,147 - ybhH b0769 0.16 +0.1 800,151 + ybhH b0769 0.16 -0.9 800,159 - ybhH b0769 0.17 -0.1 800,170 - ybhH b0769 0.18 -0.9 800,175 + ybhH b0769 0.18 -0.1 800,203 - ybhH b0769 0.21 +1.5 800,207 - ybhH b0769 0.21 +0.5 800,233 + ybhH b0769 0.24 -1.1 800,233 + ybhH b0769 0.24 +0.1 800,234 - ybhH b0769 0.24 +0.6 800,239 + ybhH b0769 0.24 +1.6 800,239 + ybhH b0769 0.24 -1.6 800,241 - ybhH b0769 0.25 +0.5 800,241 - ybhH b0769 0.25 -0.5 800,250 + ybhH b0769 0.25 +1.1 800,250 + ybhH b0769 0.25 -1.0 800,257 - ybhH b0769 0.26 -2.1 800,280 - ybhH b0769 0.28 +0.2 800,280 - ybhH b0769 0.28 +0.4 800,336 - ybhH b0769 0.34 +0.7 800,336 - ybhH b0769 0.34 +0.3 800,345 + ybhH b0769 0.34 -0.5 800,360 + ybhH b0769 0.36 +0.7 800,379 + ybhH b0769 0.38 -0.1 800,407 + ybhH b0769 0.40 +0.5 800,412 + ybhH b0769 0.41 +0.5 800,412 + ybhH b0769 0.41 +1.5 800,426 + ybhH b0769 0.42 -0.4 800,426 + ybhH b0769 0.42 -0.2 800,437 + ybhH b0769 0.43 +0.1 800,445 + ybhH b0769 0.44 -0.1 800,445 + ybhH b0769 0.44 -0.1 800,451 + ybhH b0769 0.45 -0.5 800,454 + ybhH b0769 0.45 -0.1 800,513 + ybhH b0769 0.50 -0.1 800,540 + ybhH b0769 0.53 -0.9 800,540 + ybhH b0769 0.53 +0.3 800,543 + ybhH b0769 0.53 -1.2 800,548 + ybhH b0769 0.54 -0.4 800,550 + ybhH b0769 0.54 -0.1 800,550 + ybhH b0769 0.54 +0.5 800,553 + ybhH b0769 0.54 +0.6 800,553 + ybhH b0769 0.54 -0.8 800,553 + ybhH b0769 0.54 -0.2 800,553 + ybhH b0769 0.54 +0.1 800,556 - ybhH b0769 0.55 +1.5 800,558 + ybhH b0769 0.55 +0.1 800,558 + ybhH b0769 0.55 +0.5 800,563 + ybhH b0769 0.55 -0.3 800,673 + ybhH b0769 0.66 -0.1 800,673 + ybhH b0769 0.66 -2.3 800,673 + ybhH b0769 0.66 +0.1 800,673 + ybhH b0769 0.66 -0.2 800,673 + ybhH b0769 0.66 +4.1 800,673 + ybhH b0769 0.66 +0.1 800,673 + ybhH b0769 0.66 +0.5 800,673 + ybhH b0769 0.66 -0.5 800,673 + ybhH b0769 0.66 -0.1 800,681 - ybhH b0769 0.66 +1.5 800,681 - ybhH b0769 0.66 +1.5 800,681 - ybhH b0769 0.66 +1.5 800,683 + ybhH b0769 0.67 +1.0 800,696 + ybhH b0769 0.68 -0.4 800,826 - ybhH b0769 0.80 +1.5 800,858 - ybhH b0769 0.83 +1.5 800,862 - ybhH b0769 0.84 +1.5 800,886 + ybhH b0769 0.86 -1.1 800,915 - ybhH b0769 0.89 +1.5 800,917 + ybhH b0769 0.89 +1.5 800,922 + ybhH b0769 0.89 +0.7 800,927 - ybhH b0769 0.90 +1.5 800,939 + +1.5 800,947 + +1.5 800,954 + -0.5 800,959 + +0.5 800,963 + -0.4 800,964 + +0.9 801,065 + +1.5 801,071 - +1.5 801,084 - -0.5 801,085 - -0.1 801,170 - +0.5 801,190 + +1.5 801,196 - -1.7 801,196 - +1.5 801,197 + +1.5 801,205 - -1.0 801,205 - +0.3 801,232 - -0.0 801,232 - +0.8 801,237 + +0.5 801,250 - +0.1 801,258 - ybhI b0770 0.10 +0.3 801,263 - ybhI b0770 0.11 +0.1 801,264 - ybhI b0770 0.11 -0.6 801,280 + ybhI b0770 0.12 +0.5 801,280 + ybhI b0770 0.12 +0.9 801,315 + -0.5 801,317 + ybhI b0770 0.14 -0.1 801,320 - ybhI b0770 0.15 +0.3 801,397 + ybhI b0770 0.20 +0.3 801,536 - ybhI b0770 0.30 -0.0 801,538 + ybhI b0770 0.30 +1.1 801,538 + ybhI b0770 0.30 -0.2 801,538 + ybhI b0770 0.30 -0.0 801,538 + ybhI b0770 0.30 -0.2 801,546 + ybhI b0770 0.30 -0.3 801,546 - ybhI b0770 0.30 +0.0 801,546 - ybhI b0770 0.30 +0.5 801,596 + ybhI b0770 0.34 -0.1 801,630 + ybhI b0770 0.36 -0.4 801,644 - ybhI b0770 0.37 -0.3 801,663 - ybhI b0770 0.39 +0.4 801,765 + ybhI b0770 0.46 -0.1 801,767 + ybhI b0770 0.46 +0.1 801,771 - ybhI b0770 0.46 +0.0 801,794 - ybhI b0770 0.48 +0.2 801,806 - ybhI b0770 0.49 -1.0 801,873 + ybhI b0770 0.53 +0.4 801,893 + ybhI b0770 0.55 -0.3 801,893 + ybhI b0770 0.55 +0.1 801,961 - ybhI b0770 0.59 -0.9 801,976 + ybhI b0770 0.60 +0.1 801,976 + ybhI b0770 0.60 -0.5 801,985 - ybhI b0770 0.61 +0.1 801,994 + ybhI b0770 0.62 +0.8 802,026 + ybhI b0770 0.64 +0.4 802,026 + ybhI b0770 0.64 -0.4 802,036 + ybhI b0770 0.65 -0.2 802,112 + ybhI b0770 0.70 +0.4 802,118 + ybhI b0770 0.70 +0.4 802,152 + ybhI b0770 0.73 -0.1 802,153 + ybhI b0770 0.73 +0.2 802,180 + ybhI b0770 0.75 +0.1 802,184 + ybhI b0770 0.75 -1.6 802,190 + ybhI b0770 0.75 +0.5 802,190 + ybhI b0770 0.75 +3.5 802,195 + ybhI b0770 0.76 +1.2 802,263 - ybhI b0770 0.80 -1.9 802,266 + ybhI b0770 0.81 +0.5 802,272 - ybhI b0770 0.81 -0.1 802,272 - ybhI b0770 0.81 +1.5 802,273 - ybhI b0770 0.81 +0.9 802,273 - ybhI b0770 0.81 +1.5 802,275 + ybhI b0770 0.81 +2.5 802,275 + ybhI b0770 0.81 -0.5 802,282 + ybhI b0770 0.82 +0.0 802,309 + ybhI b0770 0.84 -0.3 802,309 + ybhI b0770 0.84 +1.2 802,319 - ybhI b0770 0.84 +1.5 802,322 - ybhI b0770 0.85 +0.9 802,328 + ybhI b0770 0.85 +0.2 802,338 + ybhI b0770 0.86 +0.7 802,348 + ybhI b0770 0.86 +0.1 802,348 + ybhI b0770 0.86 -0.4 802,348 + ybhI b0770 0.86 +0.9 802,354 + ybhI b0770 0.87 +0.4 802,356 - ybhI b0770 0.87 +1.5 802,360 + ybhI b0770 0.87 +0.1 802,362 + ybhI b0770 0.87 +0.1 802,362 + ybhI b0770 0.87 -0.2 802,368 - ybhI b0770 0.88 +0.5 802,368 - ybhI b0770 0.88 +1.5 802,369 - ybhI b0770 0.88 +1.5 802,382 + ybhI b0770 0.89 +0.0 802,382 - ybhI b0770 0.89 +1.5 802,384 + ybhI b0770 0.89 +0.1 802,384 - ybhI b0770 0.89 +1.5 802,390 - ybhI b0770 0.89 -0.1 802,390 - ybhI b0770 0.89 +1.5 802,410 + -0.5 802,418 - +1.8 802,420 + +0.2 802,421 + -0.1 802,440 + -0.1 802,455 + -0.4 802,455 + +0.8 802,455 + -0.1 802,455 + -0.6 802,455 + +0.3 802,463 - +1.5 802,469 + -0.5 802,484 + -0.2 802,488 + -0.4 802,494 + -0.2 802,494 + +0.7 802,502 + -0.4 802,507 + +0.3 802,507 + -0.2 802,512 + +0.5 802,515 - -1.1 802,525 + -2.8 802,538 + +0.1 802,576 - +1.5 802,595 - +1.5 802,609 + +0.2 802,634 + -0.2 802,634 + +0.0 802,665 + +1.2 802,702 + +3.0 802,702 + +1.5 802,702 - +1.5 802,702 - +0.5 802,709 + +1.5 802,717 - +1.5 802,719 - +0.5 802,844 - +0.0 802,849 - -0.6 802,849 - -0.8 802,849 - -0.8 802,849 - -0.1 802,932 - -0.9 802,944 - -0.5 802,944 - +0.2 802,944 - +0.3 802,946 + +0.5 802,946 - +0.1 802,946 - +0.7 802,948 + +1.5 802,954 - ybhJ b0771 0.10 +0.5 802,954 - ybhJ b0771 0.10 -0.5 802,954 - ybhJ b0771 0.10 +0.1 802,954 - ybhJ b0771 0.10 +0.4 802,954 - ybhJ b0771 0.10 +1.5 802,954 - ybhJ b0771 0.10 +0.1 802,956 - ybhJ b0771 0.10 +0.2 802,963 - ybhJ b0771 0.10 -0.4 802,963 - ybhJ b0771 0.10 +0.6 802,968 - ybhJ b0771 0.11 +0.2 802,968 - ybhJ b0771 0.11 +0.4 802,969 - ybhJ b0771 0.11 +0.0 802,969 - ybhJ b0771 0.11 +0.3 802,969 - ybhJ b0771 0.11 +0.4 802,969 - ybhJ b0771 0.11 +0.5 802,982 + ybhJ b0771 0.11 -0.5 802,982 + ybhJ b0771 0.11 +0.8 802,986 - ybhJ b0771 0.11 -0.2 802,987 + ybhJ b0771 0.12 -0.5 802,990 - ybhJ b0771 0.12 -0.1 802,990 - ybhJ b0771 0.12 +0.2 802,990 - ybhJ b0771 0.12 -0.1 802,992 + ybhJ b0771 0.12 +0.6 803,005 + ybhJ b0771 0.12 -0.7 803,009 - ybhJ b0771 0.13 -0.1 803,009 - ybhJ b0771 0.13 -1.0 803,013 - ybhJ b0771 0.13 -0.1 803,013 - ybhJ b0771 0.13 +0.7 803,019 - ybhJ b0771 0.13 -0.5 803,026 - ybhJ b0771 0.13 +0.1 803,027 + ybhJ b0771 0.13 +0.2 803,028 - ybhJ b0771 0.13 +0.4 803,030 - ybhJ b0771 0.13 +0.5 803,114 + ybhJ b0771 0.17 +0.4 803,129 - ybhJ b0771 0.18 -0.1 803,165 + ybhJ b0771 0.19 -1.0 803,165 + ybhJ b0771 0.19 +0.1 803,173 + ybhJ b0771 0.20 -0.7 803,173 - ybhJ b0771 0.20 -0.0 803,181 - ybhJ b0771 0.20 +0.5 803,209 - ybhJ b0771 0.21 -1.7 803,209 - ybhJ b0771 0.21 +0.4 803,217 + ybhJ b0771 0.22 +0.9 803,217 + ybhJ b0771 0.22 +1.2 803,230 - ybhJ b0771 0.22 -0.5 803,297 - ybhJ b0771 0.25 -0.8 803,336 - ybhJ b0771 0.27 -0.1 803,336 - ybhJ b0771 0.27 -0.7 803,394 + ybhJ b0771 0.30 +0.1 803,394 + ybhJ b0771 0.30 +0.3
Or see this region's nucleotide sequence