Strain Fitness in Escherichia coli BW25113 around b0325
Experiment: pinene 0.3125 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | pinene 0.3125 vol% |
---|---|---|---|---|---|
remove | |||||
341,124 | + | yahJ | b0324 | 0.56 | -0.4 |
341,139 | - | yahJ | b0324 | 0.57 | -1.1 |
341,141 | + | yahJ | b0324 | 0.57 | +0.4 |
341,385 | - | yahJ | b0324 | 0.75 | +0.3 |
341,385 | - | yahJ | b0324 | 0.75 | +0.0 |
341,530 | + | yahJ | b0324 | 0.85 | -0.2 |
341,530 | + | yahJ | b0324 | 0.85 | -0.1 |
341,632 | + | -0.9 | |||
341,649 | - | +0.1 | |||
341,708 | + | +0.4 | |||
341,983 | - | -0.9 | |||
341,997 | + | -0.2 | |||
341,997 | - | -0.4 | |||
342,031 | + | -0.3 | |||
342,082 | - | -0.6 | |||
342,086 | - | +0.1 | |||
342,091 | + | -0.1 | |||
342,091 | + | +2.0 | |||
342,136 | - | -0.5 | |||
342,169 | + | -0.4 | |||
342,219 | + | yahK | b0325 | 0.11 | -0.7 |
342,219 | + | yahK | b0325 | 0.11 | -0.8 |
342,257 | - | yahK | b0325 | 0.14 | -0.1 |
342,276 | - | yahK | b0325 | 0.16 | -0.4 |
342,322 | - | yahK | b0325 | 0.20 | +0.4 |
342,347 | + | yahK | b0325 | 0.23 | -0.1 |
342,361 | + | yahK | b0325 | 0.24 | -1.6 |
342,422 | + | yahK | b0325 | 0.30 | +0.2 |
342,445 | + | yahK | b0325 | 0.32 | +0.2 |
342,488 | - | yahK | b0325 | 0.36 | -0.6 |
342,493 | + | yahK | b0325 | 0.37 | -0.0 |
342,510 | + | yahK | b0325 | 0.38 | +0.4 |
342,525 | + | yahK | b0325 | 0.40 | -0.6 |
342,525 | + | yahK | b0325 | 0.40 | -0.2 |
342,714 | + | yahK | b0325 | 0.58 | +0.3 |
342,714 | + | yahK | b0325 | 0.58 | -0.3 |
342,906 | - | yahK | b0325 | 0.76 | +1.5 |
342,979 | + | yahK | b0325 | 0.83 | -0.2 |
342,979 | + | yahK | b0325 | 0.83 | -0.5 |
342,986 | + | yahK | b0325 | 0.84 | -0.3 |
342,997 | + | yahK | b0325 | 0.85 | -0.4 |
343,006 | + | yahK | b0325 | 0.86 | +0.0 |
343,032 | + | yahK | b0325 | 0.88 | +0.5 |
343,033 | + | yahK | b0325 | 0.88 | -0.0 |
343,033 | + | yahK | b0325 | 0.88 | +0.6 |
343,034 | + | yahK | b0325 | 0.88 | +0.7 |
343,040 | - | yahK | b0325 | 0.89 | +0.7 |
343,048 | - | yahK | b0325 | 0.90 | -0.3 |
343,056 | + | +0.3 | |||
343,056 | + | +0.3 | |||
343,056 | + | +0.3 | |||
343,093 | + | -1.1 | |||
343,093 | + | +0.1 | |||
343,096 | - | +1.7 | |||
343,116 | - | +1.7 | |||
343,146 | + | -0.2 | |||
343,146 | + | -0.1 | |||
343,180 | + | +0.4 | |||
343,191 | + | -0.1 | |||
343,223 | + | +3.3 | |||
343,235 | + | -1.3 | |||
343,235 | + | -0.4 | |||
343,248 | + | +1.7 | |||
343,282 | + | +1.7 | |||
343,293 | + | +1.7 | |||
343,293 | + | +0.7 | |||
343,293 | + | +1.7 | |||
343,295 | + | +1.7 | |||
343,303 | + | +1.7 | |||
343,313 | - | +1.7 | |||
343,318 | - | +1.7 | |||
343,328 | + | +0.7 | |||
343,328 | + | +0.4 | |||
343,340 | + | +1.7 | |||
343,614 | - | yahL | b0326 | 0.26 | +0.7 |
343,614 | - | yahL | b0326 | 0.26 | +1.1 |
343,617 | - | yahL | b0326 | 0.27 | +1.7 |
343,625 | - | yahL | b0326 | 0.28 | +3.7 |
343,625 | - | yahL | b0326 | 0.28 | +1.7 |
343,625 | - | yahL | b0326 | 0.28 | +0.7 |
343,625 | - | yahL | b0326 | 0.28 | +0.3 |
343,627 | - | yahL | b0326 | 0.28 | +1.7 |
343,633 | - | yahL | b0326 | 0.29 | +1.7 |
343,763 | + | yahL | b0326 | 0.44 | +1.7 |
343,767 | + | yahL | b0326 | 0.45 | +1.7 |
343,771 | - | yahL | b0326 | 0.45 | -0.0 |
343,775 | + | yahL | b0326 | 0.46 | +1.7 |
343,775 | + | yahL | b0326 | 0.46 | +1.7 |
343,775 | + | yahL | b0326 | 0.46 | +1.7 |
343,775 | + | yahL | b0326 | 0.46 | +1.7 |
343,819 | - | yahL | b0326 | 0.51 | +1.7 |
343,819 | - | yahL | b0326 | 0.51 | +0.1 |
343,833 | + | yahL | b0326 | 0.53 | +1.7 |
343,852 | + | yahL | b0326 | 0.55 | +1.7 |
343,981 | + | yahL | b0326 | 0.71 | +1.7 |
343,999 | + | yahL | b0326 | 0.73 | +1.7 |
344,077 | - | yahL | b0326 | 0.83 | +1.7 |
344,080 | - | yahL | b0326 | 0.83 | -0.4 |
344,085 | + | yahL | b0326 | 0.84 | +1.7 |
344,107 | + | yahL | b0326 | 0.87 | +1.7 |
Or see this region's nucleotide sequence