Strain Fitness in Escherichia coli BW25113 around b1942
Experiment: Cholinium hydrogen phosphate 10 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cholinium hydrogen phosphate 10 vol% |
---|---|---|---|---|---|
remove | |||||
2,015,057 | - | fliI | b1941 | 0.35 | -0.7 |
2,015,057 | - | -0.0 | |||
2,015,259 | - | fliI | b1941 | 0.50 | -0.1 |
2,015,261 | - | fliI | b1941 | 0.50 | +1.4 |
2,015,261 | - | fliI | b1941 | 0.50 | -0.4 |
2,015,499 | - | fliI | b1941 | 0.67 | +1.4 |
2,015,549 | + | fliI | b1941 | 0.71 | -0.6 |
2,015,549 | + | fliI | b1941 | 0.71 | +0.5 |
2,015,560 | + | fliI | b1941 | 0.71 | -0.3 |
2,015,631 | + | fliI | b1941 | 0.77 | +0.3 |
2,015,685 | - | fliI | b1941 | 0.81 | -0.5 |
2,015,685 | - | fliI | b1941 | 0.81 | -0.1 |
2,015,701 | + | +0.5 | |||
2,015,701 | + | fliI | b1941 | 0.82 | -0.2 |
2,015,847 | - | +0.0 | |||
2,015,847 | - | +0.7 | |||
2,016,216 | - | fliJ | b1942 | 0.55 | +2.3 |
2,016,216 | - | fliJ | b1942 | 0.55 | +0.2 |
2,016,658 | - | fliK | b1943 | 0.22 | +0.6 |
2,016,927 | - | fliK | b1943 | 0.46 | +0.3 |
2,016,957 | - | fliK | b1943 | 0.48 | +0.1 |
2,017,027 | + | fliK | b1943 | 0.55 | +0.7 |
2,017,068 | - | fliK | b1943 | 0.58 | +0.9 |
2,017,076 | + | fliK | b1943 | 0.59 | -0.4 |
2,017,076 | + | fliK | b1943 | 0.59 | -0.3 |
2,017,080 | - | fliK | b1943 | 0.59 | -0.2 |
2,017,116 | + | fliK | b1943 | 0.63 | +0.3 |
2,017,182 | + | fliK | b1943 | 0.68 | +1.7 |
2,017,207 | + | fliK | b1943 | 0.71 | -0.5 |
2,017,207 | + | fliK | b1943 | 0.71 | +2.9 |
2,017,267 | + | fliK | b1943 | 0.76 | +0.5 |
2,017,323 | + | fliK | b1943 | 0.81 | +0.6 |
Or see this region's nucleotide sequence