Strain Fitness in Escherichia coli BW25113 around b4687

Experiment: Cholinium glutamate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium glutamate 10 vol%
2,697,162	+	yfhH	b2561	0.45	+0.7
2,697,181	+	yfhH	b2561	0.47	+0.5
2,697,290	+	yfhH	b2561	0.60	-0.1
2,697,290	+	yfhH	b2561	0.60	-0.3
2,697,290	+	yfhH	b2561	0.60	+0.1
2,697,320	-	yfhH	b2561	0.63	+0.3
2,697,326	+	yfhH	b2561	0.64	-0.1
2,697,326	+	yfhH	b2561	0.64	-0.2
2,697,334	-	yfhH	b2561	0.65	+0.5
2,697,355	+	yfhH	b2561	0.68	+0.9
2,697,446	+	yfhH	b2561	0.78	+0.2
2,697,472	-	yfhH	b2561	0.81	+0.2
2,697,514	+	yfhH	b2561	0.86	-0.4
2,697,586	+				+1.4
2,697,588	-				+0.4
2,697,588	-				-1.4
2,697,601	+				-0.1
2,697,609	-				+0.1
2,697,609	-				+0.4
2,697,668	+				+0.2
2,697,709	+				-0.3
2,697,719	+	yfhL	b2562	0.13	-0.0
2,697,719	+	yfhL	b2562	0.13	-0.6
2,697,720	+	yfhL	b2562	0.13	+1.3
2,697,788	+	yfhL	b2562	0.39	+0.4
2,697,788	+	yfhL	b2562	0.39	+0.6
2,697,792	+	yfhL	b2562	0.41	+0.9
2,697,794	+	yfhL	b2562	0.42	+0.0
2,697,795	+	yfhL	b2562	0.42	-0.4
2,697,795	+	yfhL	b2562	0.42	+1.0
2,697,795	+	yfhL	b2562	0.42	+1.1
2,697,795	+	yfhL	b2562	0.42	-0.1
2,697,812	+	yfhL	b2562	0.49	+0.1
2,697,814	+	yfhL	b2562	0.49	+0.2
2,697,814	+	yfhL	b2562	0.49	+0.2
2,697,816	+	yfhL	b2562	0.50	+0.1
2,697,824	-	yfhL	b2562	0.53	-0.2
2,697,824	-	yfhL	b2562	0.53	+1.4
2,697,830	-	yfhL	b2562	0.56	+2.4
2,697,833	+	yfhL	b2562	0.57	+0.4
2,697,833	+	yfhL	b2562	0.57	+0.1
2,697,839	+	yfhL	b2562	0.59	-0.4
2,697,839	+	yfhL	b2562	0.59	+0.5
2,697,839	+	yfhL	b2562	0.59	+0.9
2,697,855	+	yfhL	b2562	0.65	+0.5
2,697,865	+	yfhL	b2562	0.69	-0.1
2,697,880	+	yfhL	b2562	0.75	+0.3
2,697,919	+	yfhL	b2562	0.90	+0.5
2,697,919	+	yfhL	b2562	0.90	-1.0
2,697,921	+				-0.3
2,697,924	+				-0.4
2,697,924	+				+0.5
2,697,970	+				-0.4
2,698,051	+				-0.4
2,698,091	-				+1.4
2,698,101	-				+2.4
2,698,109	-				+1.4
2,698,111	-				-0.2
2,698,112	-				+1.4
2,698,124	-				+1.4
2,698,124	-				+1.0
2,698,134	-				+0.6
2,698,136	+				+1.4
2,698,139	-				-0.6
2,698,139	-				+0.7
2,698,168	-	shoB	b4687	0.36	+0.9
2,698,199	-	shoB	b4687	0.74	+0.7
2,698,199	-	shoB	b4687	0.74	+1.0
2,698,200	-	shoB	b4687	0.75	+0.4
2,698,200	-	shoB	b4687	0.75	+0.5
2,698,209	-	shoB	b4687	0.86	+0.7
2,698,209	-	shoB	b4687	0.86	+0.2
2,698,215	-				+0.0
2,698,215	-				-0.4
2,698,262	-				+1.0
2,698,262	-				+0.2
2,698,266	-				-0.1
2,698,266	-				-0.5
2,698,269	-				+0.0
2,698,269	-				+0.0
2,698,289	+				-0.2
2,698,293	+				+1.0
2,698,298	+				+0.1
2,698,298	-				-0.1
2,698,298	-				+0.4
2,698,301	-				-1.1
2,698,302	-				-1.3
2,698,305	+				-1.6
2,698,305	+				+1.0
2,698,305	+				+0.8
2,698,313	-				+0.2
2,698,313	-				-0.4
2,698,313	-				-0.4
2,698,313	-				-0.6
2,698,313	-				+0.0
2,698,313	-				+0.7
2,698,313	-				+1.4
2,698,315	+				-0.2
2,698,316	-				+0.3
2,698,317	+				+0.4
2,698,317	+				+1.4
2,698,325	-				+0.4
2,698,325	-				-1.7
2,698,329	+				-0.3
2,698,333	-				-0.1
2,698,335	-				-0.8
2,698,370	+				-0.8
2,698,370	+				+0.1
2,698,370	+				+1.4
2,698,370	+				+3.4
2,698,370	+				+0.3
2,698,370	+				+0.7
2,698,378	-				-0.2
2,698,378	-				+0.2
2,698,378	-				-0.0
2,698,378	-				-0.1
2,698,378	-				+2.1
2,698,385	-				-0.0
2,698,409	+				+0.4
2,698,434	+				+3.7
2,698,499	-				+0.7
2,698,515	+				-0.2
2,698,518	+				+1.4
2,698,525	+				+0.4
2,698,526	-				+0.3
2,698,526	-				-0.4
2,698,528	-				+0.2
2,698,528	-				-0.0
2,698,533	-				+0.3
2,698,537	-				-0.4
2,698,546	+				+0.3
2,698,546	+				-0.6
2,698,547	+				+1.4
2,698,549	-				-0.2
2,698,549	-				-0.6
2,698,549	-				+0.3
2,698,549	-				-1.1
2,698,549	-				+0.3
2,698,555	-	ryfC	b4608	0.17	-0.6
2,698,556	-	ryfC	b4608	0.18	+0.3
2,698,556	-	ryfC	b4608	0.18	+0.5
2,698,563	+	ryfC	b4608	0.27	-0.0
2,698,599	-	ryfC	b4608	0.74	+0.0
2,698,599	-	ryfC	b4608	0.74	-0.1
2,698,604	-	ryfC	b4608	0.81	+0.2
2,699,085	-				-0.4
2,699,173	-	pdxJ	b2564	0.21	+0.1
2,699,178	-	pdxJ	b2564	0.22	+0.2