Strain Fitness in Escherichia coli BW25113 around b3631

Experiment: Cholinium glutamate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium glutamate 10 vol%
3,802,999	-	rfaS	b3629	0.85	+0.4
3,803,184	-				+0.5
3,803,196	-				-0.9
3,803,210	-				+0.4
3,803,219	-				-0.6
3,803,224	-				+2.4
3,803,224	-				+0.2
3,803,224	-				+1.9
3,803,224	-				-0.4
3,803,318	-	rfaP	b3630	0.18	+0.9
3,803,320	-	rfaP	b3630	0.18	+0.7
3,803,332	-	rfaP	b3630	0.20	-1.6
3,803,335	-	rfaP	b3630	0.20	-1.1
3,803,364	+	rfaP	b3630	0.24	-0.6
3,803,366	-	rfaP	b3630	0.24	+0.6
3,803,366	-	rfaP	b3630	0.24	+1.5
3,803,368	-	rfaP	b3630	0.24	+0.9
3,803,377	-	rfaP	b3630	0.25	+0.6
3,803,377	-	rfaP	b3630	0.25	-0.9
3,803,382	-	rfaP	b3630	0.26	-0.6
3,803,385	-	rfaP	b3630	0.26	+0.3
3,803,393	-	rfaP	b3630	0.27	-0.4
3,803,398	-	rfaP	b3630	0.28	-0.1
3,803,403	-	rfaP	b3630	0.28	+2.1
3,803,405	-	rfaP	b3630	0.29	-0.4
3,803,405	-	rfaP	b3630	0.29	-0.6
3,803,405	-	rfaP	b3630	0.29	+0.6
3,803,405	-	rfaP	b3630	0.29	-0.6
3,803,410	-	rfaP	b3630	0.29	+2.2
3,803,415	-	rfaP	b3630	0.30	+2.1
3,803,415	-	rfaP	b3630	0.30	+1.4
3,803,473	-	rfaP	b3630	0.37	+0.4
3,803,508	-	rfaP	b3630	0.42	-0.9
3,803,508	-	rfaP	b3630	0.42	+0.9
3,803,516	-	rfaP	b3630	0.43	+0.6
3,803,524	-	rfaP	b3630	0.44	+1.7
3,803,527	-	rfaP	b3630	0.44	-0.1
3,803,532	+	rfaP	b3630	0.45	+1.9
3,803,534	-	rfaP	b3630	0.45	-0.4
3,803,534	-	rfaP	b3630	0.45	+0.4
3,803,534	-	rfaP	b3630	0.45	+1.6
3,803,534	-	rfaP	b3630	0.45	-0.1
3,803,539	-	rfaP	b3630	0.45	-0.6
3,803,539	-	rfaP	b3630	0.45	+0.6
3,803,539	-	rfaP	b3630	0.45	-0.4
3,803,540	-	rfaP	b3630	0.46	+0.9
3,803,540	-	rfaP	b3630	0.46	+0.8
3,803,550	+	rfaP	b3630	0.47	+1.9
3,803,555	+	rfaP	b3630	0.47	-1.1
3,803,556	-	rfaP	b3630	0.48	-0.9
3,803,558	-	rfaP	b3630	0.48	+0.6
3,803,558	-	rfaP	b3630	0.48	+1.3
3,803,558	-	rfaP	b3630	0.48	+1.5
3,803,558	-	rfaP	b3630	0.48	+0.2
3,803,558	-	rfaP	b3630	0.48	-1.4
3,803,558	-	rfaP	b3630	0.48	-0.5
3,803,558	-	rfaP	b3630	0.48	-0.4
3,803,558	-	rfaP	b3630	0.48	+0.5
3,803,565	+	rfaP	b3630	0.49	+1.9
3,803,571	-	rfaP	b3630	0.49	-0.1
3,803,578	-	rfaP	b3630	0.50	+0.0
3,803,602	-				-0.6
3,803,666	-	rfaP	b3630	0.61	-0.2
3,803,693	-	rfaP	b3630	0.65	+0.9
3,803,698	-	rfaP	b3630	0.65	+0.9
3,803,700	+	rfaP	b3630	0.66	+1.9
3,803,700	-	rfaP	b3630	0.66	-1.2
3,803,700	-	rfaP	b3630	0.66	+1.2
3,803,701	-	rfaP	b3630	0.66	-0.6
3,803,701	-	rfaP	b3630	0.66	+0.5
3,803,705	-	rfaP	b3630	0.66	+1.4
3,803,706	-	rfaP	b3630	0.66	+1.7
3,803,710	-	rfaP	b3630	0.67	+1.6
3,803,710	-	rfaP	b3630	0.67	+0.0
3,803,710	-	rfaP	b3630	0.67	+1.5
3,803,710	-	rfaP	b3630	0.67	+1.4
3,803,710	-	rfaP	b3630	0.67	+0.0
3,803,716	-	rfaP	b3630	0.68	+1.8
3,803,716	-	rfaP	b3630	0.68	+1.2
3,803,717	-	rfaP	b3630	0.68	-0.8
3,803,722	-	rfaP	b3630	0.68	-0.1
3,803,724	+	rfaP	b3630	0.69	+1.9
3,803,733	-	rfaP	b3630	0.70	+0.3
3,803,733	-	rfaP	b3630	0.70	-1.1
3,803,733	-	rfaP	b3630	0.70	+0.2
3,803,733	-	rfaP	b3630	0.70	-0.1
3,803,735	-	rfaP	b3630	0.70	+0.4
3,803,740	-	rfaP	b3630	0.71	+0.8
3,803,745	-	rfaP	b3630	0.71	+0.1
3,803,745	-	rfaP	b3630	0.71	+0.0
3,803,745	-	rfaP	b3630	0.71	+1.9
3,803,745	-	rfaP	b3630	0.71	+1.9
3,803,745	-	rfaP	b3630	0.71	+0.6
3,803,751	-	rfaP	b3630	0.72	+1.1
3,803,751	-	rfaP	b3630	0.72	+0.1
3,803,751	-	rfaP	b3630	0.72	+0.9
3,803,755	-	rfaP	b3630	0.73	+0.3
3,803,760	+	rfaP	b3630	0.73	+1.9
3,803,764	-	rfaP	b3630	0.74	+2.3
3,803,764	-	rfaP	b3630	0.74	+0.5
3,803,768	-	rfaP	b3630	0.74	-1.4
3,803,769	+	rfaP	b3630	0.74	+0.4
3,803,777	-	rfaP	b3630	0.75	+0.8
3,803,777	-	rfaP	b3630	0.75	+0.6
3,803,787	-	rfaP	b3630	0.77	+0.6
3,803,802	-	rfaP	b3630	0.78	-0.1
3,803,807	-	rfaP	b3630	0.79	+2.2
3,803,858	-	rfaP	b3630	0.85	+0.5
3,803,858	-	rfaP	b3630	0.85	+1.6
3,803,858	-	rfaP	b3630	0.85	+4.3
3,803,858	-	rfaP	b3630	0.85	+2.9
3,803,858	-	rfaP	b3630	0.85	+0.8
3,803,865	-	rfaP	b3630	0.86	-0.2
3,803,865	-	rfaP	b3630	0.86	-0.7
3,803,865	-	rfaP	b3630	0.86	+0.4
3,803,867	-	rfaP	b3630	0.87	+0.6
3,803,867	-	rfaP	b3630	0.87	+1.9
3,803,870	-	rfaP	b3630	0.87	-1.2
3,803,870	-	rfaP	b3630	0.87	-0.6
3,803,870	-	rfaP	b3630	0.87	+1.1
3,803,870	-	rfaP	b3630	0.87	+0.6
3,803,870	-	rfaP	b3630	0.87	+3.3
3,803,881	-	rfaP	b3630	0.88	+0.4
3,803,888	-	rfaP	b3630	0.89	+0.8
3,803,888	-	rfaP	b3630	0.89	+0.2
3,803,913	-				+0.6
3,803,924	-				+0.8
3,803,943	-				+0.9
3,803,943	-				+0.1
3,803,966	-				+0.3
3,803,980	-				-0.1
3,803,982	+				+1.4
3,803,982	+				+1.9
3,803,982	+				+1.9
3,803,990	-				-1.6
3,803,993	-				+0.0
3,804,014	+				+1.9
3,804,021	-				+0.1
3,804,022	-				+0.6
3,804,022	-				+1.1
3,804,022	-				+0.7
3,804,022	-				+0.9
3,804,022	-				+1.2
3,804,036	+				+0.4
3,804,036	-				+1.2
3,804,036	-				+0.1
3,804,044	-				+0.4
3,804,051	+				-0.4
3,804,051	+				+0.6
3,804,057	+				+1.4
3,804,059	-				+0.4
3,804,059	-				-0.9
3,804,059	-				+0.5
3,804,059	-				+0.7
3,804,059	-				-0.2
3,804,065	+				+0.4
3,804,065	-				+0.4
3,804,065	-				+0.4
3,804,065	-				+1.3
3,804,066	+				+0.1
3,804,068	+				+2.9
3,804,068	+				-0.5
3,804,074	-				+1.0
3,804,082	+	rfaG	b3631	0.10	+1.9
3,804,090	-	rfaG	b3631	0.11	+0.6
3,804,091	-	rfaG	b3631	0.11	-0.3
3,804,092	-	rfaG	b3631	0.11	+0.2
3,804,093	+	rfaG	b3631	0.11	+0.2
3,804,096	-	rfaG	b3631	0.12	+0.1
3,804,123	-	rfaG	b3631	0.14	+1.2
3,804,123	-	rfaG	b3631	0.14	+1.0
3,804,123	-	rfaG	b3631	0.14	+2.3
3,804,129	+	rfaG	b3631	0.14	+1.9
3,804,130	+	rfaG	b3631	0.15	+1.9
3,804,131	-	rfaG	b3631	0.15	-0.2
3,804,133	-	rfaG	b3631	0.15	-0.4
3,804,134	+	rfaG	b3631	0.15	+0.3
3,804,134	+	rfaG	b3631	0.15	+0.9
3,804,134	+	rfaG	b3631	0.15	-0.4
3,804,134	+	rfaG	b3631	0.15	+1.9
3,804,136	-	rfaG	b3631	0.15	+0.7
3,804,136	-	rfaG	b3631	0.15	-0.0
3,804,138	-	rfaG	b3631	0.15	+0.3
3,804,138	-	rfaG	b3631	0.15	+2.2
3,804,142	-	rfaG	b3631	0.16	-0.6
3,804,143	-	rfaG	b3631	0.16	+0.1
3,804,148	-	rfaG	b3631	0.16	+2.4
3,804,150	-	rfaG	b3631	0.16	+0.9
3,804,150	-	rfaG	b3631	0.16	+0.1
3,804,153	-	rfaG	b3631	0.17	-0.1
3,804,168	-	rfaG	b3631	0.18	+1.1
3,804,170	-	rfaG	b3631	0.18	-0.2
3,804,170	-	rfaG	b3631	0.18	-0.2
3,804,187	-	rfaG	b3631	0.20	+1.0
3,804,187	-	rfaG	b3631	0.20	-0.5
3,804,187	-	rfaG	b3631	0.20	+1.6
3,804,187	-	rfaG	b3631	0.20	+1.3
3,804,187	-	rfaG	b3631	0.20	-0.2
3,804,202	-	rfaG	b3631	0.21	+0.2
3,804,208	+	rfaG	b3631	0.22	-0.1
3,804,216	-	rfaG	b3631	0.22	-0.3
3,804,216	-	rfaG	b3631	0.22	-1.0
3,804,216	-	rfaG	b3631	0.22	+1.7
3,804,216	-	rfaG	b3631	0.22	+0.8
3,804,216	-	rfaG	b3631	0.22	+0.9
3,804,216	-	rfaG	b3631	0.22	+1.9
3,804,217	-	rfaG	b3631	0.22	-0.4
3,804,217	-	rfaG	b3631	0.22	+0.6
3,804,219	-	rfaG	b3631	0.22	+0.6
3,804,219	-	rfaG	b3631	0.22	+0.2
3,804,222	+	rfaG	b3631	0.23	+0.2
3,804,222	+	rfaG	b3631	0.23	+1.9
3,804,223	+	rfaG	b3631	0.23	+0.9
3,804,231	-	rfaG	b3631	0.24	+2.4
3,804,231	-	rfaG	b3631	0.24	+1.2
3,804,234	-	rfaG	b3631	0.24	+0.1
3,804,234	-	rfaG	b3631	0.24	+0.4
3,804,235	-	rfaG	b3631	0.24	+1.8
3,804,237	-	rfaG	b3631	0.24	-0.9
3,804,250	+	rfaG	b3631	0.25	+1.7
3,804,255	+	rfaG	b3631	0.26	-0.6
3,804,256	-	rfaG	b3631	0.26	+0.7
3,804,258	-	rfaG	b3631	0.26	+0.9
3,804,261	-	rfaG	b3631	0.26	+0.0
3,804,265	+	rfaG	b3631	0.27	+0.6
3,804,268	+	rfaG	b3631	0.27	+0.4
3,804,274	-	rfaG	b3631	0.27	-0.5
3,804,277	-	rfaG	b3631	0.28	+1.0
3,804,318	-	rfaG	b3631	0.31	+0.7
3,804,320	+	rfaG	b3631	0.31	+0.7
3,804,322	+	rfaG	b3631	0.32	+0.6
3,804,323	-	rfaG	b3631	0.32	+0.0
3,804,323	-	rfaG	b3631	0.32	+0.2
3,804,325	-	rfaG	b3631	0.32	+0.4
3,804,330	-	rfaG	b3631	0.32	-1.6
3,804,340	-	rfaG	b3631	0.33	-1.5
3,804,340	-	rfaG	b3631	0.33	-1.9
3,804,348	+	rfaG	b3631	0.34	+0.7
3,804,348	+	rfaG	b3631	0.34	+0.9
3,804,348	+	rfaG	b3631	0.34	-0.1
3,804,376	+	rfaG	b3631	0.36	-0.6
3,804,383	-	rfaG	b3631	0.37	+0.6
3,804,383	-	rfaG	b3631	0.37	-0.4
3,804,383	-	rfaG	b3631	0.37	-0.1
3,804,383	-	rfaG	b3631	0.37	+0.4
3,804,383	-	rfaG	b3631	0.37	-0.3
3,804,383	-	rfaG	b3631	0.37	-0.9
3,804,383	-	rfaG	b3631	0.37	+0.3
3,804,388	-	rfaG	b3631	0.38	+1.2
3,804,388	-	rfaG	b3631	0.38	+1.3
3,804,388	-	rfaG	b3631	0.38	+1.1
3,804,388	-	rfaG	b3631	0.38	+1.2
3,804,388	-	rfaG	b3631	0.38	+1.7
3,804,412	+	rfaG	b3631	0.40	+0.2
3,804,412	+	rfaG	b3631	0.40	-0.4
3,804,422	+	rfaG	b3631	0.41	+0.4
3,804,424	-	rfaG	b3631	0.41	-0.5
3,804,433	+	rfaG	b3631	0.42	+0.9
3,804,433	-	rfaG	b3631	0.42	-0.1
3,804,433	-	rfaG	b3631	0.42	+1.6
3,804,442	+	rfaG	b3631	0.42	+1.3
3,804,448	-	rfaG	b3631	0.43	+0.6
3,804,452	+	rfaG	b3631	0.43	+0.9
3,804,454	+	rfaG	b3631	0.43	+1.3
3,804,454	+	rfaG	b3631	0.43	+0.8
3,804,454	+	rfaG	b3631	0.43	-0.5
3,804,454	+	rfaG	b3631	0.43	+0.9
3,804,455	+	rfaG	b3631	0.43	+1.4
3,804,455	+	rfaG	b3631	0.43	-0.6
3,804,455	+	rfaG	b3631	0.43	+0.2
3,804,455	+	rfaG	b3631	0.43	+0.7
3,804,455	+	rfaG	b3631	0.43	+0.1
3,804,455	+	rfaG	b3631	0.43	-1.3
3,804,455	+	rfaG	b3631	0.43	-0.1
3,804,455	+	rfaG	b3631	0.43	+2.5
3,804,455	+	rfaG	b3631	0.43	+0.6
3,804,455	+	rfaG	b3631	0.43	-0.6
3,804,462	-	rfaG	b3631	0.44	+0.7
3,804,462	-	rfaG	b3631	0.44	+0.1
3,804,463	-	rfaG	b3631	0.44	+0.9
3,804,463	-	rfaG	b3631	0.44	+1.4
3,804,463	-	rfaG	b3631	0.44	+0.3
3,804,463	-	rfaG	b3631	0.44	+0.7
3,804,463	-	rfaG	b3631	0.44	+0.5
3,804,463	-	rfaG	b3631	0.44	+0.2
3,804,463	-	rfaG	b3631	0.44	-0.4
3,804,463	-	rfaG	b3631	0.44	+0.9
3,804,463	-	rfaG	b3631	0.44	+0.2
3,804,463	-	rfaG	b3631	0.44	-0.4
3,804,464	+	rfaG	b3631	0.44	+1.5
3,804,480	+	rfaG	b3631	0.46	+0.7
3,804,522	+	rfaG	b3631	0.49	+2.0
3,804,562	-	rfaG	b3631	0.53	+0.5
3,804,566	+	rfaG	b3631	0.53	+1.9
3,804,588	-	rfaG	b3631	0.55	+2.5
3,804,588	-	rfaG	b3631	0.55	+0.2
3,804,623	-	rfaG	b3631	0.58	+0.2
3,804,629	-	rfaG	b3631	0.59	+0.2
3,804,629	-	rfaG	b3631	0.59	+0.9
3,804,629	-	rfaG	b3631	0.59	+0.6
3,804,629	-	rfaG	b3631	0.59	-0.4
3,804,629	-	rfaG	b3631	0.59	+0.6
3,804,658	-	rfaG	b3631	0.62	+0.3
3,804,658	-	rfaG	b3631	0.62	-0.1
3,804,659	+	rfaG	b3631	0.62	+1.9
3,804,675	-	rfaG	b3631	0.63	-0.5
3,804,675	-	rfaG	b3631	0.63	+0.2
3,804,689	-	rfaG	b3631	0.64	-0.3
3,804,689	-	rfaG	b3631	0.64	+0.1
3,804,689	-	rfaG	b3631	0.64	-0.5
3,804,689	-	rfaG	b3631	0.64	-0.9
3,804,689	-	rfaG	b3631	0.64	+0.8
3,804,689	-	rfaG	b3631	0.64	-1.0
3,804,689	-	rfaG	b3631	0.64	+0.2
3,804,689	-	rfaG	b3631	0.64	-0.2
3,804,689	-	rfaG	b3631	0.64	-0.4
3,804,689	-	rfaG	b3631	0.64	+0.2
3,804,689	-	rfaG	b3631	0.64	+0.4
3,804,689	-	rfaG	b3631	0.64	-1.5
3,804,699	-	rfaG	b3631	0.65	+1.9
3,804,699	-	rfaG	b3631	0.65	+0.4
3,804,699	-	rfaG	b3631	0.65	-0.2
3,804,699	-	rfaG	b3631	0.65	+1.6
3,804,715	-	rfaG	b3631	0.67	-0.1
3,804,725	+	rfaG	b3631	0.67	+1.9
3,804,725	-	rfaG	b3631	0.67	+2.1
3,804,733	-	rfaG	b3631	0.68	+0.4
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